Click the Summary/Torsions/Similar/... tabs for more details.
Center view on step or molecule.
Show reference and contacts model altloc

Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

SXL-LETHAL PROTEIN/RNA COMPLEX

Results of the assignment of 22 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Your browser does not support the HTML5 canvas tag.
Your browser does not support the HTML5 canvas tag.
Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
011b7f_P_G1_U2NANNANT01.36OPS1
021b7f_P_U2_U3NANNANT01.31ZZ02
031b7f_P_U3_G4OPNOP20190.78OP20
041b7f_P_G4_U5OPNOP22350.52OP22
051b7f_P_U5_U6NANNANT01.34OP25
061b7f_P_U6_U7NANNANT01.21OP17
071b7f_P_U7_U8AAAAA08320.32AA08
081b7f_P_U8_U9NANNANT00.65OP30
091b7f_P_U9_U10NANNANT00.63OP22
101b7f_P_U10_U11NANNANT00.80OP22
111b7f_P_U11_U12NANNANT02.38BB1S
121b7f_Q_G1_U2NANNANT01.99IC05
131b7f_Q_U2_U3NANNANT01.85OP21
141b7f_Q_U3_G4NANNANT01.66AB02
151b7f_Q_G4_U5OPNOP22130.70OP22
161b7f_Q_U5_U6NANNANT01.35OP25
171b7f_Q_U6_U7NANNANT01.33OP17
181b7f_Q_U7_U8AAAAA00200.38AA00
191b7f_Q_U8_U9NANNANT00.60OP30
201b7f_Q_U9_U10NANNANT00.62OP22
211b7f_Q_U10_U11NANNANT00.80OP22
221b7f_Q_U11_U12NANNANT02.85BB1S

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

Return up to random steps in PDB structures ( include large structures )

Show



Color by conformation group (pyramids)

group
visible

Color by NtC (balls)

A

A-B

B-A

B

IC

OPN

Z

N