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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

BACTERIOPHAGE MS2 CAPSID PROTEIN/RNA COMPLEX

Results of the assignment of 26 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
011aq3_R_A3_U4AAAAA00790.16AA00
021aq3_R_U4_G5AAAAA08670.24AA08
031aq3_R_G5_A6NANNANT00.94OP29
041aq3_R_A6_G7NANNANT00.84OP31
051aq3_R_G7_G8AAAAA08630.23AA08
061aq3_R_G8_A9AAAAA00730.27AA00
071aq3_R_A9_U10OPNOP0970.44OP09
081aq3_R_U10_U11NANNANT00.37OP20
091aq3_R_U11_A12NANNANT01.37OP22
101aq3_R_A12_C13NANNANT00.49OP27
111aq3_R_C13_C14AAAAA00840.17AA00
121aq3_R_C14_C15AAAAA00820.24AA00
131aq3_R_C15_A16AAAAA08950.18AA08
141aq3_R_A16_U17AAAAA08880.22AA08
151aq3_R_U17_G18AAAAA03570.26AA03
161aq3_S_U4_G5AAAAA00790.18AA00
171aq3_S_G5_A6NANNANT00.88OP29
181aq3_S_A6_G7NANNANT00.83OP31
191aq3_S_G7_G8AAAAA00350.32AA00
201aq3_S_G8_A9AAAAA08710.36AA08
211aq3_S_A9_U10OPNOP09320.33OP09
221aq3_S_U10_U11NANNANT00.44OP20
231aq3_S_U11_A12NANNANT01.50OP22
241aq3_S_A12_C13NANNANT00.52OP27
251aq3_S_C13_C14AAAAA00840.21AA00
261aq3_S_C14_C15AAAAA00520.30AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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