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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

ZIF268 ZINC FINGER-DNA COMPLEX

Results of the assignment of 20 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
011aay_B_DA1_DG2SYNBBS1120.42BBS1
021aay_B_DG2_DC3BBBBB00700.22BB00
031aay_B_DC3_DG4BB2BB07560.34BB07
041aay_B_DG4_DT5BBBBB00660.40BB00
051aay_B_DT5_DG6BB2BB07500.33BB07
061aay_B_DG6_DG7BBBBB00760.21BB00
071aay_B_DG7_DG8BBwBB02660.27BB02
081aay_B_DG8_DC9BBBBB00220.33BB00
091aay_B_DC9_DG10BB2BB07670.32BB07
101aay_B_DG10_DT11B-ABA05880.19BA05
111aay_C_DT51_DA52A-BAB01380.38AB01
121aay_C_DA52_DC53BBBBB00690.30BB00
131aay_C_DC53_DG54BBBBB00800.29BB00
141aay_C_DG54_DC55B-ABA16740.18BA16
151aay_C_DC55_DC56A-BAB05890.14AB05
161aay_C_DC56_DC57B-ABA05870.18BA05
171aay_C_DC57_DA58NANNANT00.32BB10
181aay_C_DA58_DC59A-BAB01330.38AB01
191aay_C_DC59_DG60BBBBB01780.17BB01
201aay_C_DG60_DC61BBBBB01540.30BB01

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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