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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

SATELLITE TOBACCO MOSAIC VIRUS/RNA COMPLEX

Results of the assignment of 18 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
011a34_B_A1_A2AAAAA00140.39AA00
021a34_B_A2_A3AAAAA00480.28AA00
031a34_B_A3_A4AAAAA00710.17AA00
041a34_B_A4_A5AAAAA00630.23AA00
051a34_B_A5_A6AAAAA00860.14AA00
061a34_B_A6_A7AAAAA00720.25AA00
071a34_B_A7_A8AAAAA00480.25AA00
081a34_B_A8_A9AAAAA03200.36AA03
091a34_B_A9_A10NANNANT00.66AA02
101a34_C_U1_U2AAAAA00370.33AA00
111a34_C_U2_U3AAAAA00490.32AA00
121a34_C_U3_U4AAAAA00700.23AA00
131a34_C_U4_U5AAAAA08850.16AA08
141a34_C_U5_U6AAAAA00570.29AA00
151a34_C_U6_U7AAAAA00690.20AA00
161a34_C_U7_U8AAAAA00800.25AA00
171a34_C_U8_U9AAAAA00110.43AA00
181a34_C_U9_U10NANNANT00.37AA12

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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