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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

PHOSPHATE SYSTEM POSITIVE REGULATORY PROTEIN PHO4/DNA COMPLEX

Results of the assignment of 32 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
011a0a_C_DC1_DT2miBBB10530.43BB10
021a0a_C_DT2_DC3NANNANT00.58BB00
031a0a_C_DC3_DA4miBBB10100.49BB10
041a0a_C_DA4_DC5NANNANT00.76BB00
051a0a_C_DC5_DA6B12BB04230.47BB04
061a0a_C_DA6_DC7BBBBB00270.59BB00
071a0a_C_DC7_DG8NANNANT00.51BB17
081a0a_C_DG8_DT9NANNANT00.61BB14
091a0a_C_DT9_DG10miBBB10560.56BB10
101a0a_C_DG10_DG11NANNANT00.41BB02
111a0a_C_DG11_DG12NANNANT00.68BB07
121a0a_C_DG12_DA13NANNANT00.95OP26
131a0a_C_DA13_DC14NANNANT00.52BB17
141a0a_C_DC14_DT15NANNANT00.53BB00
151a0a_C_DT15_DA16BBBBB00180.45BB00
161a0a_C_DA16_DG17BBwBB02530.31BB02
171a0a_D_DC1_DT2NANNANT00.52BB17
181a0a_D_DT2_DA3BBBBB00530.30BB00
191a0a_D_DA3_DG4BB2BB07150.47BB07
201a0a_D_DG4_DT5NANNANT00.51BB00
211a0a_D_DT5_DC6NANNANT00.56AB04
221a0a_D_DC6_DC7NANNANT00.62BB04
231a0a_D_DC7_DC8NANNANT00.89BB00
241a0a_D_DC8_DA9BBBBB00220.45BB00
251a0a_D_DA9_DC10B12BB04310.35BB04
261a0a_D_DC10_DG11NANNANT00.72BB17
271a0a_D_DG11_DT12NANNANT00.63BB02
281a0a_D_DT12_DG13B12BB04270.54BB04
291a0a_D_DG13_DT14NANNANT00.52BB15
301a0a_D_DT14_DG15BBBBB00460.41BB00
311a0a_D_DG15_DA16NANNANT00.33BB17
321a0a_D_DA16_DG17NANNANT00.56BB17

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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