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Conformers: ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF DGTP (1 MILLIMOLAR) AND MNCL2 (5 MILLIMOLAR)

Results of the assignment of 13 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
018icv_T_DC1_DA2NANNANT00.55 BB00
028icv_T_DA2_DT3BBBBB00170.34 BB00
038icv_T_DT3_DT4BBBBB00210.39 BB00
048icv_T_DT4_DA5BBBBB00540.34 BB00
058icv_T_DA5_DG6NANNANT00.36 BA05
068icv_T_DG6_DA7NANNANT00.46 BB10
078icv_P_DT1_DC2A-BAB03510.27 AB03
088icv_P_DC2_DT3B12BB04210.42 BB04
098icv_P_DT3_DA4BBBBB00150.32 BB00
108icv_P_DA4_DA5B-ABA05140.26 BA05
118icv_P_DA5_DT6NANNANT00.29 BB02
128icv_P_DT6_DG7NANNANT00.54 BB02
138icv_P_DG7_DG8NANNANT00.61 BB00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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