Conformers:
ABBIImiBZICOPNSYNN
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DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF DCTP (1 MILLIMOLAR) AND MNCL2 (5 MILLIMOLAR)
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 12 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 8ics_T_DC1_DA2 | NAN | NANT | 0 | 0.46 |
| 02 | 8ics_T_DA2_DT3 | BBB | BB00 | 38 | 0.36 |
| 03 | 8ics_T_DT3_DT4 | A-B | AB03 | 40 | 0.46 |
| 04 | 8ics_T_DT4_DA5 | NAN | NANT | 0 | 0.94 |
| 05 | 8ics_T_DA5_DG6 | BBB | BB00 | 39 | 0.28 |
| 06 | 8ics_T_DG6_DA7 | NAN | NANT | 0 | 0.53 |
| 07 | 8ics_P_DT1_DC2 | BBB | BB00 | 44 | 0.31 |
| 08 | 8ics_P_DC2_DT3 | B12 | BB04 | 7 | 0.59 |
| 09 | 8ics_P_DT3_DA4 | B-A | BA08 | 48 | 0.47 |
| 10 | 8ics_P_DA4_DA5 | BBB | BB01 | 26 | 0.32 |
| 11 | 8ics_P_DA5_DT6 | BBw | BB02 | 36 | 0.36 |
| 12 | 8ics_P_DT6_DG7 | NAN | NANT | 0 | 0.50 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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