DNATCO v4.1: results

Crystal structure of NAD-II riboswitch (two strands) with NMN at 1.67 angstrom

Results of the assignment of 51 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
01	8i3z_A_A1_G2	NAN	NANT	0	0.44	OP11
02	8i3z_A_G2_A3	NAN	NANT	0	0.32	AA06
03	8i3z_A_A3_G4	AAA	AA00	18	0.27	AA00
04	8i3z_A_G4_C5	AAA	AA00	90	0.24	AA00
05	8i3z_A_C5_G6	ICL	IC01	80	0.39	IC01
06	8i3z_A_G6_U7	NAN	NANT	0	0.77	OP26
07	8i3z_A_U7_U8	AAA	AA00	81	0.18	AA00
08	8i3z_A_U8_G9	NAN	NANT	0	1.75	BB1S
09	8i3z_A_G9_C10	NAN	NANT	0	0.57	OP21
10	8i3z_A_C10_G11	NAN	NANT	0	1.74	OP17
11	8i3z_A_G11_U12	OPN	OP11	16	0.61	OP11
12	8i3z_A_U12_C13	AAA	AA00	92	0.15	AA00
13	8i3z_A_C13_C14	AAw	AA01	93	0.20	AA01
14	8i3z_A_C14_G15	AAA	AA08	66	0.37	AA08
15	8i3z_A_G15_A16	NAN	NANT	0	0.76	OP21
16	8i3z_A_A16_A17	NAN	NANT	0	0.39	OP11
17	8i3z_A_A17_A18	AAA	AA08	71	0.35	AA08
18	8i3z_A_A18_G19	AAA	AA00	59	0.29	AA00
19	8i3z_A_G19_U20	AAA	AA04	91	0.22	AA04
20	8i3z_A_G22_C23	AAA	AA00	80	0.17	AA00
21	8i3z_A_C23_C24	AAw	AA06	84	0.22	AA06
22	8i3z_B_G26_C27	A-B	AB05	38	0.51	AB05
23	8i3z_B_C27_G28	B-A	BA10	19	0.42	BA10
24	8i3z_B_G28_A29	AAA	AA08	77	0.29	AA08
25	8i3z_B_A29_C30	A-B	AB05	24	0.23	AB05
26	8i3z_B_C30_A31	NAN	NANT	0	0.90	OP10
27	8i3z_B_A31_C32	AAA	AA00	59	0.26	AA00
28	8i3z_B_C32_G33	AAu	AA07	69	0.29	AA07
29	8i3z_B_G33_G34	AAA	AA00	31	0.48	AA00
30	8i3z_B_G34_C35	AAA	AA00	92	0.13	AA00
31	8i3z_B_C35_U36	AAA	AA00	90	0.20	AA00
32	8i3z_B_U36_C37	AAA	AA08	71	0.27	AA08
33	8i3z_B_C37_U38	A-B	AB05	84	0.27	AB05
34	8i3z_B_U38_U39	OPN	OP22	54	0.52	OP22
35	8i3z_B_U39_U40	NAN	NANT	0	1.31	OP26
36	8i3z_B_U40_A41	NAN	NANT	0	0.70	BBS1
37	8i3z_B_A41_A42	NAN	NANT	0	0.83	OP24
38	8i3z_B_A42_A43	AAA	AA00	39	0.36	AA00
39	8i3z_B_A43_A44	A-B	AB05	13	0.52	AB05
40	8i3z_B_A44_A45	B-A	BA16	76	0.23	BA16
41	8i3z_B_A45_C46	AAA	AA00	76	0.29	AA00
42	8i3z_B_C46_A47	NAN	NANT	0	0.48	IC07
43	8i3z_B_A47_A48	ICL	IC01	66	0.50	IC01
44	8i3z_B_A48_A49	NAN	NANT	0	0.66	OP18
45	8i3z_B_A49_A50	NAN	NANT	0	0.71	OP12
46	8i3z_B_A50_G51	AAu	AA12	90	0.30	AA12
47	8i3z_B_G51_G52	AAA	AA00	69	0.23	AA00
48	8i3z_B_G52_A53	AAA	AA00	84	0.18	AA00
49	8i3z_B_A53_G54	AAA	AA00	80	0.24	AA00
50	8i3z_B_G54_A55	NAN	NANT	0	0.56	IC02
51	8i3z_B_A55_A56	NAN	NANT	0	1.20	OP25

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

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Results of the assignment of 51 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Definitions

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