DNATCO v4.1: results

Crystal structure of NAD-II riboswitch (single strand) with NMN

Results of the assignment of 51 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
01	8hb8_A_G1_C2	AAA	AA08	87	0.14	AA08
02	8hb8_A_C2_G3	AAA	AA00	79	0.17	AA00
03	8hb8_A_G3_G4	AAA	AA00	96	0.13	AA00
04	8hb8_A_G4_C5	AAA	AA00	86	0.27	AA00
05	8hb8_A_C5_G6	ICL	IC01	67	0.45	IC01
06	8hb8_A_G6_U7	NAN	NANT	0	0.59	OP26
07	8hb8_A_U7_U8	AAA	AA00	66	0.14	AA00
08	8hb8_A_U8_G9	NAN	NANT	0	0.81	OP09
09	8hb8_A_G9_C10	NAN	NANT	0	0.74	OP21
10	8hb8_A_C10_G11	NAN	NANT	0	1.70	OP14
11	8hb8_A_G11_U12	NAN	NANT	0	1.57	OP29
12	8hb8_A_U12_C13	AAA	AA08	76	0.19	AA08
13	8hb8_A_C13_C14	AAw	AA01	95	0.16	AA01
14	8hb8_A_C14_G15	AAA	AA08	60	0.37	AA08
15	8hb8_A_G15_A16	NAN	NANT	0	0.75	OP21
16	8hb8_A_A16_A17	NAN	NANT	0	0.35	OP11
17	8hb8_A_A17_A18	AAA	AA00	57	0.39	AA00
18	8hb8_A_A18_G19	AAA	AA00	78	0.21	AA00
19	8hb8_A_G19_U20	AAA	AA00	79	0.15	AA00
20	8hb8_A_U20_C21	AAA	AA00	89	0.19	AA00
21	8hb8_A_C21_U22	AAA	AA00	82	0.22	AA00
22	8hb8_A_U22_A23	AAA	AA00	74	0.24	AA00
23	8hb8_A_A23_A24	ICL	IC03	71	0.34	IC03
24	8hb8_A_A24_A25	NAN	NANT	0	1.23	OP21
25	8hb8_A_G28_A29	AAA	AA03	84	0.21	AA03
26	8hb8_A_A29_C30	AAA	AA00	67	0.15	AA00
27	8hb8_A_C30_A31	NAN	NANT	0	1.12	AA07
28	8hb8_A_A31_C32	AAA	AA00	85	0.21	AA00
29	8hb8_A_C32_G33	AAu	AA13	64	0.24	AA13
30	8hb8_A_G33_G34	AAw	AA10	34	0.52	AA10
31	8hb8_A_G34_C35	AAA	AA00	68	0.16	AA00
32	8hb8_A_C35_C36	AAA	AA00	76	0.14	AA00
33	8hb8_A_C36_G37	AAA	AA08	73	0.23	AA08
34	8hb8_A_G37_C38	A-B	AB05	80	0.27	AB05
35	8hb8_A_C38_U39	NAN	NANT	0	1.76	OP27
36	8hb8_A_U39_U40	NAN	NANT	0	0.81	OP21
37	8hb8_A_U40_A41	OPN	OP11	72	0.47	OP11
38	8hb8_A_A41_A42	OPN	OP06	69	0.23	OP06
39	8hb8_A_A42_A43	AAA	AA00	61	0.22	AA00
40	8hb8_A_A43_A44	AAw	AA01	65	0.32	AA01
41	8hb8_A_A44_A45	AAA	AA08	87	0.24	AA08
42	8hb8_A_A45_C46	AAA	AA00	80	0.20	AA00
43	8hb8_A_C46_A47	ICL	IC07	13	0.50	IC07
44	8hb8_A_A47_A48	ICL	IC01	50	0.59	IC01
45	8hb8_A_A48_A49	NAN	NANT	0	0.77	OP18
46	8hb8_A_A49_A50	NAN	NANT	0	0.93	OPS1
47	8hb8_A_A50_G51	AAu	AA12	86	0.31	AA12
48	8hb8_A_G51_G52	AAA	AA00	72	0.23	AA00
49	8hb8_A_G52_A53	AAA	AA00	93	0.17	AA00
50	8hb8_A_A53_G54	AAA	AA08	89	0.17	AA08
51	8hb8_A_G54_A55	NAN	NANT	0	0.64	IC04

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

Similarity of step to class averages

Browse conformers

Show

Color by conformation group (pyramids)

Color by NtC (balls)

A-B

B-A

B

IC

OPN

Z

N

Results of the assignment of 51 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Download

Restraints

User-based restraints

Definitions

Download the papers

Browse conformers

Show

group
visible