DNATCO v4.1: results

Crystal structure of NAD-II riboswitch (two strands) with NR

Results of the assignment of 51 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
01	8hb3_A_A1_G2	NAN	NANT	0	0.79	OP31
02	8hb3_A_G2_A3	NAN	NANT	0	0.47	AA08
03	8hb3_A_A3_G4	AAA	AA03	62	0.21	AA03
04	8hb3_A_G4_C5	AAA	AA04	78	0.24	AA04
05	8hb3_A_C5_G6	ICL	IC01	30	0.46	IC01
06	8hb3_A_G6_U7	NAN	NANT	0	0.76	OP26
07	8hb3_A_U7_U8	AAA	AA08	77	0.23	AA08
08	8hb3_A_U8_G9	NAN	NANT	0	1.52	OP02
09	8hb3_A_G9_C10	NAN	NANT	0	0.98	OP18
10	8hb3_A_C10_G11	NAN	NANT	0	1.39	OP17
11	8hb3_A_G11_U12	NAN	NANT	0	1.62	OP06
12	8hb3_A_U12_C13	AAA	AA00	90	0.15	AA00
13	8hb3_A_C13_C14	AAw	AA01	78	0.17	AA01
14	8hb3_A_C14_G15	AAA	AA08	70	0.36	AA08
15	8hb3_A_G15_A16	NAN	NANT	0	0.82	OP21
16	8hb3_A_A16_A17	NAN	NANT	0	0.41	OP11
17	8hb3_A_A17_A18	AAA	AA08	69	0.36	AA08
18	8hb3_A_A18_G19	AAA	AA08	90	0.28	AA08
19	8hb3_A_G19_U20	AAA	AA00	79	0.17	AA00
20	8hb3_A_G22_C23	NAN	NANT	0	0.34	AA03
21	8hb3_A_C23_C24	AAw	AA01	43	0.18	AA01
22	8hb3_B_G26_C27	A-B	AB04	65	0.36	AB04
23	8hb3_B_C27_G28	NAN	NANT	0	0.54	BB01
24	8hb3_B_G28_A29	AAA	AA00	57	0.31	AA00
25	8hb3_B_A29_C30	A-B	AB04	36	0.28	AB04
26	8hb3_B_C30_A31	NAN	NANT	0	0.94	OP10
27	8hb3_B_A31_C32	AAA	AA00	61	0.26	AA00
28	8hb3_B_C32_G33	AAu	AA07	76	0.25	AA07
29	8hb3_B_G33_G34	AAA	AA00	37	0.42	AA00
30	8hb3_B_G34_C35	AAA	AA00	64	0.17	AA00
31	8hb3_B_C35_U36	AAA	AA00	83	0.20	AA00
32	8hb3_B_U36_C37	AAA	AA08	80	0.27	AA08
33	8hb3_B_C37_U38	A-B	AB05	86	0.23	AB05
34	8hb3_B_U38_U39	NAN	NANT	0	0.97	OP23
35	8hb3_B_U39_U40	NAN	NANT	0	1.08	BA17
36	8hb3_B_U40_A41	NAN	NANT	0	0.85	BB00
37	8hb3_B_A41_A42	NAN	NANT	0	0.87	OP24
38	8hb3_B_A42_A43	AAA	AA08	77	0.30	AA08
39	8hb3_B_A43_A44	A-B	AB05	15	0.52	AB05
40	8hb3_B_A44_A45	B-A	BA13	67	0.26	BA13
41	8hb3_B_A45_C46	AAA	AA00	72	0.30	AA00
42	8hb3_B_C46_A47	NAN	NANT	0	0.85	AA01
43	8hb3_B_A47_A48	ICL	IC01	52	0.47	IC01
44	8hb3_B_A48_A49	NAN	NANT	0	1.74	ZZ1S
45	8hb3_B_A49_A50	OPN	OPS1	20	0.72	OPS1
46	8hb3_B_A50_G51	AAu	AA12	84	0.30	AA12
47	8hb3_B_G51_G52	AAA	AA00	78	0.20	AA00
48	8hb3_B_G52_A53	AAA	AA00	90	0.11	AA00
49	8hb3_B_A53_G54	AAA	AA00	60	0.26	AA00
50	8hb3_B_G54_A55	NAN	NANT	0	0.57	IC03
51	8hb3_B_A55_A56	NAN	NANT	0	0.71	OP22

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

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Results of the assignment of 51 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Definitions

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