DNATCO v4.1: results

Crystal structure of NAD-II riboswitch (two strands) with NMN

Results of the assignment of 50 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
01	8hb1_A_A1_G2	OPN	OP16	26	0.51	OP16
02	8hb1_A_G2_A3	AAA	AA08	80	0.21	AA08
03	8hb1_A_A3_G4	AAA	AA00	93	0.10	AA00
04	8hb1_A_G4_C5	AAA	AA00	80	0.28	AA00
05	8hb1_A_C5_G6	NAN	NANT	0	0.54	IC03
06	8hb1_A_G6_U7	NAN	NANT	0	0.68	OP26
07	8hb1_A_U7_U8	AAA	AA00	85	0.19	AA00
08	8hb1_A_U8_G9	NAN	NANT	0	1.80	BB1S
09	8hb1_A_G9_C10	NAN	NANT	0	1.03	OP18
10	8hb1_A_C10_G11	NAN	NANT	0	1.67	OP17
11	8hb1_A_G11_U12	OPN	OP11	66	0.53	OP11
12	8hb1_A_U12_C13	AAA	AA00	94	0.16	AA00
13	8hb1_A_C13_C14	AAw	AA01	83	0.16	AA01
14	8hb1_A_C14_G15	AAA	AA00	20	0.46	AA00
15	8hb1_A_G15_A16	NAN	NANT	0	0.78	OP21
16	8hb1_A_A16_A17	OPN	OP11	70	0.34	OP11
17	8hb1_A_A17_A18	AAA	AA00	48	0.40	AA00
18	8hb1_A_A18_G19	AAA	AA00	57	0.26	AA00
19	8hb1_A_G19_U20	AAA	AA04	82	0.24	AA04
20	8hb1_A_G22_C23	AAA	AA00	35	0.33	AA00
21	8hb1_A_C23_C24	AAw	AA06	81	0.24	AA06
22	8hb1_B_G26_C27	A-B	AB04	55	0.33	AB04
23	8hb1_B_C27_G28	NAN	NANT	0	0.55	BB02
24	8hb1_B_G28_A29	AAA	AA00	22	0.43	AA00
25	8hb1_B_A29_C30	A-B	AB04	67	0.24	AB04
26	8hb1_B_C30_A31	NAN	NANT	0	1.45	OP15
27	8hb1_B_A31_C32	AAA	AA00	86	0.20	AA00
28	8hb1_B_C32_G33	AAu	AA07	89	0.24	AA07
29	8hb1_B_G33_G34	AAA	AA00	13	0.51	AA00
30	8hb1_B_G34_C35	AAA	AA00	89	0.18	AA00
31	8hb1_B_C35_U36	AAA	AA00	78	0.22	AA00
32	8hb1_B_U36_C37	AAA	AA08	56	0.27	AA08
33	8hb1_B_C37_U38	A-B	AB05	92	0.24	AB05
34	8hb1_B_U38_U39	OPN	OP22	71	0.58	OP22
35	8hb1_B_U39_U40	NAN	NANT	0	0.51	ZZ02
36	8hb1_B_U40_A41	NAN	NANT	0	0.66	AB01
37	8hb1_B_A41_A42	NAN	NANT	0	0.83	OP24
38	8hb1_B_A42_A43	AAA	AA08	69	0.30	AA08
39	8hb1_B_A43_A44	A-B	AB05	22	0.52	AB05
40	8hb1_B_A44_A45	B-A	BA13	77	0.23	BA13
41	8hb1_B_A45_C46	AAA	AA00	70	0.30	AA00
42	8hb1_B_C46_A47	NAN	NANT	0	0.53	IC07
43	8hb1_B_A47_A48	ICL	IC01	64	0.49	IC01
44	8hb1_B_A48_A49	NAN	NANT	0	0.71	OP18
45	8hb1_B_A49_A50	OPN	OP12	37	0.57	OP12
46	8hb1_B_A50_G51	AAu	AA12	69	0.35	AA12
47	8hb1_B_G51_G52	AAA	AA00	73	0.22	AA00
48	8hb1_B_G52_A53	AAA	AA00	82	0.15	AA00
49	8hb1_B_A53_G54	AAA	AA00	72	0.28	AA00
50	8hb1_B_G54_A55	NAN	NANT	0	0.80	IC03

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

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Results of the assignment of 50 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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