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Conformers: ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Crystal structure of Cas12a protein

Results of the assignment of 20 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
018h9d_G_A3_A4OPNOP22220.61 OP22
028h9d_G_A4_U5NANNANT00.75 OP20
038h9d_G_U5_U6NANNANT01.07 OP14
048h9d_G_U6_U7AAAAA08750.27 AA08
058h9d_G_U7_C8AAAAA00880.17 AA00
068h9d_G_C8_U9AAAAA00860.17 AA00
078h9d_G_U9_A10AAAAA00750.20 AA00
088h9d_G_A10_C11NANNANT00.48 AA10
098h9d_G_C11_U12A-BAB05600.27 AB05
108h9d_G_U12_A13NANNANT00.64 BB20
118h9d_G_A13_A14NANNANT00.79 ZZ02
128h9d_G_A14_G15NANNANT01.87 BB11
138h9d_G_G15_U16NANNANT01.07 OP16
148h9d_G_U16_G17NANNANT01.55 OP27
158h9d_G_G17_U18NANNANT00.51 AA12
168h9d_G_U18_A19AAAAA00790.14 AA00
178h9d_G_A19_G20AAAAA00760.17 AA00
188h9d_G_G20_A21AAAAA00710.27 AA00
198h9d_G_A21_U22AAAAA08630.42 AA08
208h9d_G_U22_C23NANNANT01.36 OP31

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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