Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Crystal Engineering with One 8-mer DNA
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 19 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 8g4g_E_DC1_DC2 | NAN | NANT | 0 | 0.57 |
| 02 | 8g4g_E_DC2_DG3 | NAN | NANT | 0 | 0.56 |
| 03 | 8g4g_A_DC1_DC2 | NAN | NANT | 0 | 0.40 |
| 04 | 8g4g_A_DC2_DG3 | BBB | BB00 | 84 | 0.30 |
| 05 | 8g4g_B_DA1_DT2 | BBw | BB02 | 37 | 0.36 |
| 06 | 8g4g_B_DT2_DC3 | BBB | BB00 | 24 | 0.23 |
| 07 | 8g4g_B_DC3_DG4 | B12 | BB04 | 64 | 0.17 |
| 08 | 8g4g_B_DG4_DG5 | BBB | BB00 | 80 | 0.24 |
| 09 | 8g4g_B_DG5_DC6 | miB | BB15 | 29 | 0.31 |
| 10 | 8g4g_B_DC6_DC7 | BBB | BB00 | 80 | 0.10 |
| 11 | 8g4g_B_DC7_DG8 | B12 | BB04 | 43 | 0.41 |
| 12 | 8g4g_C_DA1_DT2 | A-B | AB01 | 16 | 0.40 |
| 13 | 8g4g_C_DT2_DC3 | BBB | BB00 | 43 | 0.24 |
| 14 | 8g4g_C_DC3_DG4 | BBB | BB00 | 86 | 0.23 |
| 15 | 8g4g_C_DG4_DG5 | BBB | BB00 | 12 | 0.22 |
| 16 | 8g4g_D_DA1_DT2 | BBB | BB00 | 72 | 0.29 |
| 17 | 8g4g_D_DT2_DC3 | miB | BB10 | 40 | 0.28 |
| 18 | 8g4g_D_DC3_DG4 | B12 | BB04 | 35 | 0.21 |
| 19 | 8g4g_D_DG4_DG5 | B-A | BA01 | 50 | 0.12 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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