Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
CamA Adenine Methyltransferase Complexed to Cognate Substrate DNA and Inhibitor 11b (YD907)
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 78 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 8fs2_D_DT1_DT2 | BBB | BB01 | 25 | 0.26 |
| 02 | 8fs2_D_DT2_DC3 | B-A | BA08 | 78 | 0.36 |
| 03 | 8fs2_D_DC3_DA4 | A-B | AB01 | 69 | 0.30 |
| 04 | 8fs2_D_DA4_DA5 | B12 | BB04 | 60 | 0.32 |
| 05 | 8fs2_D_DA5_DA6 | B-A | BA05 | 50 | 0.33 |
| 06 | 8fs2_D_DA6_DA7 | NAN | NANT | 0 | 0.85 |
| 07 | 8fs2_D_DA7_DA8 | NAN | NANT | 0 | 1.73 |
| 08 | 8fs2_D_DA8_DG9 | NAN | NANT | 0 | 1.90 |
| 09 | 8fs2_D_DG9_DT10 | NAN | NANT | 0 | 0.74 |
| 10 | 8fs2_D_DT10_DC11 | BBB | BB00 | 87 | 0.14 |
| 11 | 8fs2_D_DC11_DC12 | BBB | BB00 | 28 | 0.27 |
| 12 | 8fs2_D_DC12_DC13 | BBB | BB00 | 44 | 0.26 |
| 13 | 8fs2_D_DC13_DA14 | B12 | BB04 | 65 | 0.35 |
| 14 | 8fs2_E_DA1_DT2 | NAN | NANT | 0 | 0.54 |
| 15 | 8fs2_E_DT2_DG3 | BBB | BB00 | 47 | 0.37 |
| 16 | 8fs2_E_DG3_DG4 | BBB | BB00 | 74 | 0.23 |
| 17 | 8fs2_E_DG4_DG5 | B12 | BB04 | 77 | 0.12 |
| 18 | 8fs2_E_DG5_DA6 | BBB | BB00 | 73 | 0.32 |
| 19 | 8fs2_E_DA6_DC7 | BBB | BB01 | 68 | 0.26 |
| 20 | 8fs2_E_DC7_DT8 | BBB | BB00 | 15 | 0.31 |
| 21 | 8fs2_E_DT8_DT9 | NAN | NANT | 0 | 0.35 |
| 22 | 8fs2_E_DT9_DT10 | BBB | BB00 | 85 | 0.19 |
| 23 | 8fs2_E_DT10_DT11 | BB2 | BB07 | 39 | 0.33 |
| 24 | 8fs2_E_DT11_DT12 | B-A | BA05 | 76 | 0.18 |
| 25 | 8fs2_E_DT12_DG13 | A-B | AB01 | 87 | 0.20 |
| 26 | 8fs2_E_DG13_DA14 | B-A | BA05 | 76 | 0.33 |
| 27 | 8fs2_F_DT1_DT2 | A-B | AB05 | 64 | 0.32 |
| 28 | 8fs2_F_DT2_DC3 | B-A | BA08 | 56 | 0.28 |
| 29 | 8fs2_F_DC3_DA4 | A-B | AB01 | 68 | 0.29 |
| 30 | 8fs2_F_DA4_DA5 | B12 | BB04 | 55 | 0.34 |
| 31 | 8fs2_F_DA5_DA6 | B-A | BA05 | 56 | 0.32 |
| 32 | 8fs2_F_DA6_DA7 | NAN | NANT | 0 | 0.83 |
| 33 | 8fs2_F_DA7_DA8 | NAN | NANT | 0 | 1.72 |
| 34 | 8fs2_F_DA8_DG9 | NAN | NANT | 0 | 1.89 |
| 35 | 8fs2_F_DG9_DT10 | NAN | NANT | 0 | 0.73 |
| 36 | 8fs2_F_DT10_DC11 | BBB | BB00 | 86 | 0.17 |
| 37 | 8fs2_F_DC11_DC12 | BBB | BB00 | 42 | 0.24 |
| 38 | 8fs2_F_DC12_DC13 | BBB | BB00 | 52 | 0.17 |
| 39 | 8fs2_F_DC13_DA14 | B12 | BB04 | 66 | 0.29 |
| 40 | 8fs2_G_DA1_DT2 | NAN | NANT | 0 | 0.53 |
| 41 | 8fs2_G_DT2_DG3 | BBB | BB00 | 67 | 0.30 |
| 42 | 8fs2_G_DG3_DG4 | BBB | BB00 | 75 | 0.19 |
| 43 | 8fs2_G_DG4_DG5 | B12 | BB04 | 69 | 0.11 |
| 44 | 8fs2_G_DG5_DA6 | BBB | BB00 | 78 | 0.30 |
| 45 | 8fs2_G_DA6_DC7 | BBB | BB01 | 63 | 0.28 |
| 46 | 8fs2_G_DC7_DT8 | BBB | BB00 | 17 | 0.31 |
| 47 | 8fs2_G_DT8_DT9 | NAN | NANT | 0 | 0.36 |
| 48 | 8fs2_G_DT9_DT10 | BBB | BB00 | 86 | 0.19 |
| 49 | 8fs2_G_DT10_DT11 | BB2 | BB07 | 33 | 0.34 |
| 50 | 8fs2_G_DT11_DT12 | B-A | BA05 | 73 | 0.20 |
| 51 | 8fs2_G_DT12_DG13 | A-B | AB01 | 86 | 0.17 |
| 52 | 8fs2_G_DG13_DA14 | B-A | BA05 | 78 | 0.30 |
| 53 | 8fs2_H_DT1_DT2 | A-B | AB05 | 48 | 0.23 |
| 54 | 8fs2_H_DT2_DC3 | B-A | BA08 | 61 | 0.27 |
| 55 | 8fs2_H_DC3_DA4 | A-B | AB05 | 58 | 0.27 |
| 56 | 8fs2_H_DA4_DA5 | B12 | BB04 | 55 | 0.35 |
| 57 | 8fs2_H_DA5_DA6 | B-A | BA05 | 52 | 0.34 |
| 58 | 8fs2_H_DA6_DA7 | NAN | NANT | 0 | 0.84 |
| 59 | 8fs2_H_DA7_DA8 | NAN | NANT | 0 | 1.74 |
| 60 | 8fs2_H_DA8_DG9 | NAN | NANT | 0 | 1.90 |
| 61 | 8fs2_H_DG9_DT10 | NAN | NANT | 0 | 0.65 |
| 62 | 8fs2_H_DT10_DC11 | BBB | BB00 | 82 | 0.18 |
| 63 | 8fs2_H_DC11_DC12 | BBB | BB00 | 30 | 0.18 |
| 64 | 8fs2_H_DC12_DC13 | BBB | BB00 | 46 | 0.25 |
| 65 | 8fs2_H_DC13_DA14 | B12 | BB04 | 64 | 0.37 |
| 66 | 8fs2_I_DA1_DT2 | NAN | NANT | 0 | 0.57 |
| 67 | 8fs2_I_DT2_DG3 | BBB | BB00 | 30 | 0.43 |
| 68 | 8fs2_I_DG3_DG4 | BBB | BB00 | 67 | 0.32 |
| 69 | 8fs2_I_DG4_DG5 | B12 | BB04 | 78 | 0.23 |
| 70 | 8fs2_I_DG5_DA6 | BBB | BB00 | 89 | 0.21 |
| 71 | 8fs2_I_DA6_DC7 | B-A | BA05 | 77 | 0.27 |
| 72 | 8fs2_I_DC7_DT8 | A-B | AB03 | 86 | 0.27 |
| 73 | 8fs2_I_DT8_DT9 | NAN | NANT | 0 | 0.33 |
| 74 | 8fs2_I_DT9_DT10 | BBB | BB00 | 89 | 0.16 |
| 75 | 8fs2_I_DT10_DT11 | BB2 | BB07 | 34 | 0.35 |
| 76 | 8fs2_I_DT11_DT12 | B-A | BA05 | 74 | 0.20 |
| 77 | 8fs2_I_DT12_DG13 | A-B | AB01 | 83 | 0.18 |
| 78 | 8fs2_I_DG13_DA14 | B-A | BA05 | 70 | 0.32 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
Show
| Color by conformation group (pyramids) | |
|---|---|
| group | |||||||||
| visible |
| Color by NtC (balls) |
|---|
| A | ||||
|---|---|---|---|---|
| A-B | ||||
|---|---|---|---|---|
| B-A | ||||
|---|---|---|---|---|
| B | ||||
|---|---|---|---|---|
| IC | ||||
|---|---|---|---|---|
| OPN | ||||
|---|---|---|---|---|
| Z | ||||
|---|---|---|---|---|
| N | ||||
|---|---|---|---|---|