Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Structure of Lettuce C20T bound to DFAME
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 52 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 8fi8_A_DC1_DT2 | BBB | BB00 | 92 | 0.17 |
| 02 | 8fi8_A_DT2_DT3 | BBB | BB00 | 62 | 0.23 |
| 03 | 8fi8_A_DT3_DA4 | B-A | BA08 | 62 | 0.30 |
| 04 | 8fi8_A_DA4_DG5 | BBB | BB01 | 64 | 0.26 |
| 05 | 8fi8_A_DG5_DT6 | BBB | BB00 | 81 | 0.24 |
| 06 | 8fi8_A_DT6_DA.A7 | B12 | BB04 | 82 | 0.30 |
| 07 | 8fi8_A_DT6_DA.B7 | NAN | NANT | 0 | 0.62 |
| 08 | 8fi8_A_DA.A7_DG8 | BBB | BB00 | 88 | 0.13 |
| 09 | 8fi8_A_DA.B7_DG8 | SYN | BBS1 | 57 | 0.35 |
| 10 | 8fi8_A_DG8_DG9 | NAN | NANT | 0 | 1.51 |
| 11 | 8fi8_A_DG9_DG10 | SYN | BBS1 | 60 | 0.21 |
| 12 | 8fi8_A_DG10_DA11 | NAN | NANT | 0 | 0.40 |
| 13 | 8fi8_A_DA11_DT12 | AAA | AA00 | 76 | 0.20 |
| 14 | 8fi8_A_DT12_DG13 | AAA | AA08 | 59 | 0.45 |
| 15 | 8fi8_A_DG13_DA14 | NAN | NANT | 0 | 1.58 |
| 16 | 8fi8_A_DA14_DT15 | NAN | NANT | 0 | 0.60 |
| 17 | 8fi8_A_DT15_DG16 | BBB | BB00 | 49 | 0.55 |
| 18 | 8fi8_A_DG16_DC17 | BBB | BB00 | 50 | 0.34 |
| 19 | 8fi8_A_DC17_DG18 | SYN | BB2S | 13 | 0.57 |
| 20 | 8fi8_A_DG18_DG19 | SYN | BBS1 | 85 | 0.27 |
| 21 | 8fi8_A_DG19_DT20 | NAN | NANT | 0 | 0.31 |
| 22 | 8fi8_A_DT20_DA21 | NAN | NANT | 0 | 0.51 |
| 23 | 8fi8_A_DA21_DG22 | NAN | NANT | 0 | 0.41 |
| 24 | 8fi8_A_DG22_DT23 | BBB | BB00 | 31 | 0.31 |
| 25 | 8fi8_A_DT23_DG24 | NAN | NANT | 0 | 1.17 |
| 26 | 8fi8_A_DG24_DG25 | NAN | NANT | 0 | 0.55 |
| 27 | 8fi8_A_DG25_DG26 | NAN | NANT | 0 | 0.74 |
| 28 | 8fi8_A_DG26_DC27 | miB | BB10 | 30 | 0.35 |
| 29 | 8fi8_A_DC27_DT28 | BBB | BB01 | 37 | 0.32 |
| 30 | 8fi8_A_DT28_DT29 | BBB | BB00 | 69 | 0.32 |
| 31 | 8fi8_A_DT29_DC30 | BBB | BB00 | 81 | 0.10 |
| 32 | 8fi8_A_DC30_DG31 | B12 | BB04 | 91 | 0.14 |
| 33 | 8fi8_A_DG31_DC32 | BBB | BB00 | 94 | 0.10 |
| 34 | 8fi8_A_DC32_DA33 | B12 | BB04 | 60 | 0.36 |
| 35 | 8fi8_A_DA33_DG34 | BBB | BB00 | 68 | 0.26 |
| 36 | 8fi8_A_DG34_DT35 | B-A | BA05 | 51 | 0.26 |
| 37 | 8fi8_A_DC37_DC38 | NAN | NANT | 0 | 2.49 |
| 38 | 8fi8_A_DC38_DT39 | NAN | NANT | 0 | 1.70 |
| 39 | 8fi8_A_DT39_DG40 | B-A | BA17 | 59 | 0.20 |
| 40 | 8fi8_A_DG40_DC41 | BBB | BB00 | 19 | 0.35 |
| 41 | 8fi8_A_DC41_DG42 | B-A | BA08 | 50 | 0.32 |
| 42 | 8fi8_A_DG42_DA43 | NAN | NANT | 0 | 0.70 |
| 43 | 8fi8_A_DA43_DG44 | BBB | BB00 | 46 | 0.28 |
| 44 | 8fi8_A_DG44_DG45 | NAN | NANT | 0 | 1.56 |
| 45 | 8fi8_A_DG45_DG46 | SYN | BBS1 | 52 | 0.22 |
| 46 | 8fi8_A_DG46_DG47 | B-A | BA08 | 39 | 0.41 |
| 47 | 8fi8_A_DG47_DA48 | A-B | AB05 | 81 | 0.23 |
| 48 | 8fi8_A_DA48_DC49 | BBB | BB00 | 67 | 0.23 |
| 49 | 8fi8_A_DC49_DT50 | BBB | BB00 | 85 | 0.17 |
| 50 | 8fi8_A_DT50_DA51 | NAN | NANT | 0 | 0.36 |
| 51 | 8fi8_A_DA51_DA52 | BBB | BB00 | 57 | 0.33 |
| 52 | 8fi8_A_DA52_DG53 | miB | BB12 | 42 | 0.36 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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