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Conformers: ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Structure of Lettuce C20T bound to DFHO

Results of the assignment of 54 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
018fi7_A_DC1_DT2BBBBB00840.23 BB00
028fi7_A_DT2_DT3NANNANT00.29 BB15
038fi7_A_DT3_DA4miBBB10770.24 BB10
048fi7_A_DA4_DG5BBBBB00580.29 BB00
058fi7_A_DG5_DT6BBBBB00720.23 BB00
068fi7_A_DT6_DA.A7BBBBB00650.23 BB00
078fi7_A_DT6_DA.B7NANNANT00.56 AB2S
088fi7_A_DA.A7_DG8BBBBB00820.16 BB00
098fi7_A_DA.B7_DG8SYNBBS1520.37 BBS1
108fi7_A_DG8_DG9NANNANT01.50 ZZ2S
118fi7_A_DG9_DG10SYNBBS1460.20 BBS1
128fi7_A_DG10_DA11NANNANT00.47 BA09
138fi7_A_DA11_DT12NANNANT00.48 AA06
148fi7_A_DT12_DG13AAAAA08360.54 AA08
158fi7_A_DG13_DA14NANNANT00.74 OP04
168fi7_A_DA14_DT15NANNANT00.66 BBS1
178fi7_A_DT15_DG16B12BB04490.44 BB04
188fi7_A_DG16_DC17B-ABA10680.23 BA10
198fi7_A_DC17_DG18NANNANT00.93 AB2S
208fi7_A_DG18_DG19SYNBBS1370.49 BBS1
218fi7_A_DG19_DT20NANNANT00.37 OP15
228fi7_A_DT20_DA21NANNANT00.54 BB16
238fi7_A_DA21_DG22BBBBB00340.39 BB00
248fi7_A_DG22_DT23BBBBB00790.20 BB00
258fi7_A_DT23_DG24NANNANT01.21 ZZ2S
268fi7_A_DG24_DG25SYNBBS1760.16 BBS1
278fi7_A_DG25_DG26BB2BB07120.54 BB07
288fi7_A_DG26_DC27miBBB10450.34 BB10
298fi7_A_DC27_DT28BBBBB01300.31 BB01
308fi7_A_DT28_DT29BBBBB00640.29 BB00
318fi7_A_DT29_DC30BBBBB00700.17 BB00
328fi7_A_DC30_DG31B12BB04590.19 BB04
338fi7_A_DG31_DC32BBBBB00830.17 BB00
348fi7_A_DC32_DA33B12BB04640.31 BB04
358fi7_A_DA33_DG34BBBBB00620.36 BB00
368fi7_A_DG34_DT35NANNANT00.56 BB07
378fi7_A_DT35_DT36NANNANT02.78 OP22
388fi7_A_DT36_DC37NANNANT02.36 OP22
398fi7_A_DC37_DC38NANNANT02.48 OP22
408fi7_A_DC38_DT39NANNANT01.57 IC03
418fi7_A_DT39_DG40BB2BB07280.28 BB07
428fi7_A_DG40_DC41BB2BB08270.46 BB08
438fi7_A_DC41_DG42NANNANT00.71 BA05
448fi7_A_DG42_DA43NANNANT00.77 IC03
458fi7_A_DA43_DG44BBBBB00210.40 BB00
468fi7_A_DG44_DG45NANNANT00.62 OP10
478fi7_A_DG45_DG46NANNANT00.34 BBS1
488fi7_A_DG46_DG47NANNANT00.52 BA05
498fi7_A_DG47_DA48BBwBB16290.63 BB16
508fi7_A_DA48_DC49BBBBB00830.20 BB00
518fi7_A_DC49_DT50BBBBB00890.13 BB00
528fi7_A_DT50_DA51B12BB04680.33 BB04
538fi7_A_DA51_DA52BBBBB00700.31 BB00
548fi7_A_DA52_DG53miBBB13650.25 BB13

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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