Home or other PDB ID
 
 
 
 
 
 
 
 
 
Selection mode
 
 
 
 
 
 
Conformers: ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Structure of Lettuce C20T bound to DFHBI-1T

Results of the assignment of 55 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Your browser does not support the HTML5 canvas tag.
Your browser does not support the HTML5 canvas tag.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
018fi2_A_DC1_DT2BBBBB00780.20 BB00
028fi2_A_DT2_DT3BBBBB00760.19 BB00
038fi2_A_DT3_DA4B12BB04870.20 BB04
048fi2_A_DA4_DG5BBBBB00290.28 BB00
058fi2_A_DG5_DT6BBBBB00750.22 BB00
068fi2_A_DT6_DA.A7BBBBB00650.25 BB00
078fi2_A_DT6_DA.B7NANNANT00.56 AB2S
088fi2_A_DA.A7_DG8BBBBB01650.18 BB01
098fi2_A_DA.B7_DG8SYNBBS1310.36 BBS1
108fi2_A_DG8_DG9NANNANT01.55 ZZ2S
118fi2_A_DG9_DG10SYNBBS1880.13 BBS1
128fi2_A_DG10_DA11NANNANT00.76 BB12
138fi2_A_DA11_DT12AAAAA00680.20 AA00
148fi2_A_DT12_DG13AAAAA08460.40 AA08
158fi2_A_DG13_DA14NANNANT01.55 BB1S
168fi2_A_DA14_DT15NANNANT00.59 BBS1
178fi2_A_DT15_DG16BBBBB00700.35 BB00
188fi2_A_DG16_DC17BBBBB01500.26 BB01
198fi2_A_DC17_DG18NANNANT00.60 BB2S
208fi2_A_DG18_DG19NANNANT00.66 BB08
218fi2_A_DG19_DT20NANNANT00.97 OP22
228fi2_A_DT20_DA21NANNANT00.51 BB16
238fi2_A_DA21_DG22BBBBB00340.39 BB00
248fi2_A_DG22_DT23BBBBB00840.17 BB00
258fi2_A_DT23_DG24NANNANT01.25 ZZ2S
268fi2_A_DG24_DG25NANNANT00.65 BB05
278fi2_A_DG25_DG26NANNANT00.77 BB02
288fi2_A_DG26_DC27BBBBB00130.40 BB00
298fi2_A_DC27_DT28NANNANT00.65 BB12
308fi2_A_DT28_DT29A-BAB05810.23 AB05
318fi2_A_DT29_DC.A30B-ABA08430.41 BA08
328fi2_A_DT29_DC.B30BBwBB02180.46 BB02
338fi2_A_DC.A30_DG.A31NANNANT00.48 AA01
348fi2_A_DC.B30_DG.B31NANNANT00.39 BB08
358fi2_A_DG.A31_DC32BBwBB16770.31 BB16
368fi2_A_DG.B31_DC32BBBBB00690.30 BB00
378fi2_A_DC32_DA33B12BB04870.24 BB04
388fi2_A_DA33_DG34BBBBB00590.31 BB00
398fi2_A_DG34_DT35B-ABA05410.16 BA05
408fi2_A_DT35_DT36NANNANT01.54 OP31
418fi2_A_DT36_DC37NANNANT02.14 IC05
428fi2_A_DT39_DG40B12BB04230.65 BB04
438fi2_A_DG40_DC41B12BB05220.33 BB05
448fi2_A_DC41_DG42NANNANT00.71 BA10
458fi2_A_DG42_DA43NANNANT00.73 IC03
468fi2_A_DA43_DG44BBBBB00560.36 BB00
478fi2_A_DG44_DG45NANNANT01.41 ZZ2S
488fi2_A_DG45_DG46NANNANT00.33 BBS1
498fi2_A_DG46_DG47NANNANT00.43 AA04
508fi2_A_DG47_DA48A-BAB05800.22 AB05
518fi2_A_DA48_DC49BBBBB01700.21 BB01
528fi2_A_DC49_DT50BBBBB00830.15 BB00
538fi2_A_DT50_DA51BBBBB00690.27 BB00
548fi2_A_DA51_DA52BBBBB00790.20 BB00
558fi2_A_DA52_DG53miBBB12360.38 BB12

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

Return up to random steps in PDB structures ( include large structures )

Show




Color by conformation group (pyramids)

group
visible

Color by NtC (balls)

A

A-B

B-A

B

IC

OPN

Z

N