Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Structure of Lettuce aptamer bound to DFHO
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 50 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 8fhz_A_DC1_DT2 | BBB | BB00 | 80 | 0.26 |
| 02 | 8fhz_A_DT2_DT3 | BBB | BB00 | 51 | 0.17 |
| 03 | 8fhz_A_DT3_DA4 | B12 | BB04 | 76 | 0.25 |
| 04 | 8fhz_A_DA4_DG5 | B12 | BB04 | 51 | 0.32 |
| 05 | 8fhz_A_DG5_DT6 | miB | BB15 | 52 | 0.33 |
| 06 | 8fhz_A_DT6_DA7 | BBB | BB00 | 26 | 0.24 |
| 07 | 8fhz_A_DA7_DG8 | BBB | BB00 | 76 | 0.16 |
| 08 | 8fhz_A_DG8_DG9 | NAN | NANT | 0 | 1.43 |
| 09 | 8fhz_A_DG9_DG10 | SYN | BBS1 | 14 | 0.28 |
| 10 | 8fhz_A_DG10_DA11 | NAN | NANT | 0 | 0.58 |
| 11 | 8fhz_A_DA11_DT12 | AAA | AA00 | 74 | 0.24 |
| 12 | 8fhz_A_DT12_DG13 | AAA | AA08 | 57 | 0.43 |
| 13 | 8fhz_A_DG13_DA14 | NAN | NANT | 0 | 1.55 |
| 14 | 8fhz_A_DA14_DT15 | NAN | NANT | 0 | 0.57 |
| 15 | 8fhz_A_DT15_DG16 | BBw | BB16 | 20 | 0.32 |
| 16 | 8fhz_A_DG16_DC17 | B-A | BA05 | 37 | 0.28 |
| 17 | 8fhz_A_DC17_DG18 | NAN | NANT | 0 | 0.67 |
| 18 | 8fhz_A_DG18_DG19 | SYN | BBS1 | 58 | 0.24 |
| 19 | 8fhz_A_DG19_DC20 | NAN | NANT | 0 | 0.34 |
| 20 | 8fhz_A_DC20_DA21 | NAN | NANT | 0 | 0.77 |
| 21 | 8fhz_A_DA21_DG22 | BBB | BB00 | 20 | 0.42 |
| 22 | 8fhz_A_DG22_DT23 | BBB | BB01 | 67 | 0.18 |
| 23 | 8fhz_A_DT23_DG24 | NAN | NANT | 0 | 1.19 |
| 24 | 8fhz_A_DG24_DG25 | SYN | BBS1 | 70 | 0.17 |
| 25 | 8fhz_A_DG25_DG26 | NAN | NANT | 0 | 0.54 |
| 26 | 8fhz_A_DG26_DC27 | AAA | AA00 | 45 | 0.31 |
| 27 | 8fhz_A_DC27_DT28 | AAw | AA05 | 25 | 0.49 |
| 28 | 8fhz_A_DT28_DT29 | A-B | AB05 | 45 | 0.27 |
| 29 | 8fhz_A_DT29_DC30 | BBw | BB02 | 9 | 0.34 |
| 30 | 8fhz_A_DC30_DG31 | B12 | BB04 | 10 | 0.26 |
| 31 | 8fhz_A_DG31_DC32 | BBB | BB00 | 59 | 0.29 |
| 32 | 8fhz_A_DC32_DA33 | BBw | BB11 | 57 | 0.47 |
| 33 | 8fhz_A_DA33_DG34 | BBB | BB00 | 25 | 0.57 |
| 34 | 8fhz_A_DG34_DT35 | NAN | NANT | 0 | 0.34 |
| 35 | 8fhz_A_DT35_DT36 | NAN | NANT | 0 | 0.55 |
| 36 | 8fhz_A_DT36_DC37 | NAN | NANT | 0 | 2.38 |
| 37 | 8fhz_A_DT39_DG40 | NAN | NANT | 0 | 0.70 |
| 38 | 8fhz_A_DG40_DC41 | NAN | NANT | 0 | 0.51 |
| 39 | 8fhz_A_DC41_DG42 | B-A | BA08 | 32 | 0.35 |
| 40 | 8fhz_A_DG42_DA43 | NAN | NANT | 0 | 0.79 |
| 41 | 8fhz_A_DA43_DG44 | BBB | BB00 | 25 | 0.36 |
| 42 | 8fhz_A_DG44_DG45 | NAN | NANT | 0 | 1.60 |
| 43 | 8fhz_A_DG45_DG46 | NAN | NANT | 0 | 0.69 |
| 44 | 8fhz_A_DG46_DG47 | NAN | NANT | 0 | 0.47 |
| 45 | 8fhz_A_DG47_DA48 | NAN | NANT | 0 | 0.46 |
| 46 | 8fhz_A_DA48_DC49 | NAN | NANT | 0 | 0.52 |
| 47 | 8fhz_A_DC49_DT50 | A-B | AB02 | 29 | 0.35 |
| 48 | 8fhz_A_DT50_DA51 | BBB | BB00 | 80 | 0.25 |
| 49 | 8fhz_A_DA51_DA52 | BBB | BB00 | 61 | 0.31 |
| 50 | 8fhz_A_DA52_DG53 | BBw | BB02 | 13 | 0.49 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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