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Conformers: ABBIImiBZICOPNSYNN
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PreQ1-1 (type-1) riboswitch with stacked metabolites and a C10-G34 base pair in the expression platform

Results of the assignment of 89 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
018fb3_A_U1_G2AAAAA00740.29 AA00
028fb3_A_G2_U3AAAAA00690.09 AA00
038fb3_A_U3_G4AAAAA08870.18 AA08
048fb3_A_G4_G5AAAAA00770.12 AA00
058fb3_A_G5_U6AAuAA07400.45 AA07
068fb3_A_U6_U7AAwAA01550.24 AA01
078fb3_A_U7_C8NANNANT00.76 AA03
088fb3_A_C8_G9AAAAA00560.30 AA00
098fb3_A_G9_C10OPNOP03730.31 OP03
108fb3_A_C10_A11AAAAA00680.31 AA00
118fb3_A_A11_A12NANNANT00.98 AB2S
128fb3_A_A12_C13NANNANT01.81 OP29
138fb3_A_C13_C14NANNANT00.50 AA05
148fb3_A_C14_A15AAAAA08570.32 AA08
158fb3_A_A15_U16AAAAA08750.21 AA08
168fb3_A_U16_C17AAAAA08880.17 AA08
178fb3_A_C17_C18AAAAA00550.27 AA00
188fb3_A_C18_C19AAAAA08870.11 AA08
198fb3_A_C19_A20AAAAA00890.17 AA00
208fb3_A_A20_C21AAAAA08810.28 AA08
218fb3_A_C21_A22A-BAB05890.24 AB05
228fb3_A_A22_U23OPNOP22270.61 OP22
238fb3_A_U23_A24NANNANT00.60 ZZ02
248fb3_A_A24_A25NANNANT01.08 BB12
258fb3_A_A25_A26NANNANT00.40 BA16
268fb3_A_A26_A27NANNANT00.66 AA10
278fb3_A_A27_A28AAAAA08870.27 AA08
288fb3_A_A28_A29AAwAA11220.53 AA11
298fb3_A_A29_A30NANNANT00.55 AA10
308fb3_A_A30_C31AAAAA00750.24 AA00
318fb3_A_C31_U32AAAAA00900.20 AA00
328fb3_A_U32_A33A-BAB05950.15 AB05
338fb3_A_A33_G34NANNANT00.83 BB07
348fb3_B_G2_U3AAAAA00650.25 AA00
358fb3_B_U3_G4AAAAA00640.31 AA00
368fb3_B_G4_G5AAAAA00890.13 AA00
378fb3_B_G5_U6AAuAA12770.45 AA12
388fb3_B_U6_U7AAAAA00620.30 AA00
398fb3_B_U7_C8AAAAA08540.44 AA08
408fb3_B_C8_G9AAAAA00700.35 AA00
418fb3_B_G9_C10OPNOP03750.28 OP03
428fb3_B_C10_A11AAAAA08800.28 AA08
438fb3_B_A11_A12NANNANT01.02 AB2S
448fb3_B_A12_C13NANNANT01.69 OP29
458fb3_B_C13_C14AAAAA08790.36 AA08
468fb3_B_C14_A15AAAAA00340.32 AA00
478fb3_B_A15_U16AAAAA00770.23 AA00
488fb3_B_U16_C17AAAAA08780.35 AA08
498fb3_B_C17_C18AAAAA00390.38 AA00
508fb3_B_C18_C19AAAAA00840.18 AA00
518fb3_B_C19_A20NANNANT00.28 AA06
528fb3_B_A20_C21AAAAA08880.21 AA08
538fb3_B_A27_A28AAwAA06660.41 AA06
548fb3_B_A28_A29AAwAA11200.53 AA11
558fb3_B_A29_A30AAwAA10590.42 AA10
568fb3_B_A30_C31AAAAA08840.23 AA08
578fb3_B_C31_U32AAAAA00490.21 AA00
588fb3_B_U32_A33A-BAB05360.30 AB05
598fb3_B_A33_G34NANNANT00.85 OP25
608fb3_C_U1_G2AAAAA00540.37 AA00
618fb3_C_G2_U3AAAAA08710.23 AA08
628fb3_C_U3_G4AAAAA08800.25 AA08
638fb3_C_G4_G5AAAAA00710.15 AA00
648fb3_C_G5_U6AAuAA12230.50 AA12
658fb3_C_U6_U7AAwAA01650.23 AA01
668fb3_C_U7_C8AAAAA08560.54 AA08
678fb3_C_C8_G9AAAAA00630.37 AA00
688fb3_C_G9_C10OPNOP03230.23 OP03
698fb3_C_C10_A11AAAAA08340.40 AA08
708fb3_C_A11_A12NANNANT00.93 AB2S
718fb3_C_A12_C13NANNANT02.09 OPS1
728fb3_C_C13_C14AAAAA00670.30 AA00
738fb3_C_C14_A15AAAAA00630.33 AA00
748fb3_C_A15_U16AAAAA08810.11 AA08
758fb3_C_U16_C17AAAAA00430.39 AA00
768fb3_C_C17_C18AAAAA00480.33 AA00
778fb3_C_C18_C19AAAAA00920.13 AA00
788fb3_C_C19_A20AAAAA00910.21 AA00
798fb3_C_A20_C21AAAAA08810.28 AA08
808fb3_C_C21_A22A-BAB05840.23 AB05
818fb3_C_A25_A26NANNANT00.80 AA11
828fb3_C_A26_A27NANNANT00.63 IC07
838fb3_C_A27_A28AAAAA04840.23 AA04
848fb3_C_A28_A29AAwAA11240.55 AA11
858fb3_C_A29_A30AAwAA10410.40 AA10
868fb3_C_A30_C31AAAAA08890.18 AA08
878fb3_C_C31_U32AAAAA08910.20 AA08
888fb3_C_U32_A33A-BAB05870.23 AB05
898fb3_C_A33_G34NANNANT00.98 OP25

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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