DNATCO v4.1: results

Apo structure of the TPP riboswitch aptamer domain

Results of the assignment of 133 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
001	8f4o_A_A12_C13	AAA	AA08	90	0.19	AA08
002	8f4o_A_C13_U14	AAA	AA08	82	0.21	AA08
003	8f4o_A_U14_C15	AAA	AA04	82	0.13	AA04
004	8f4o_A_C15_G16	AAA	AA08	43	0.33	AA08
005	8f4o_A_G16_G17	AAA	AA03	69	0.29	AA03
006	8f4o_A_G17_G18	AAA	AA00	58	0.23	AA00
007	8f4o_A_G18_G19	AAA	AA00	66	0.24	AA00
008	8f4o_A_G19_U20	AAA	AA00	61	0.29	AA00
009	8f4o_A_U20_G.A21	NAN	NANT	0	0.66	OP02
010	8f4o_A_U20_G.B21	NAN	NANT	0	1.03	OP30
011	8f4o_A_G.A21_C22	NAN	NANT	0	0.56	AA10
012	8f4o_A_G.B21_C22	NAN	NANT	0	1.48	OP01
013	8f4o_A_C22_C23	NAN	NANT	0	0.56	AA10
014	8f4o_A_C23_C24	AAA	AA08	75	0.20	AA08
015	8f4o_A_C24_U25	AAA	AA08	84	0.24	AA08
016	8f4o_A_U25_U26	AAw	AA06	71	0.35	AA06
017	8f4o_A_U26_C27	NAN	NANT	0	0.66	ZZ01
018	8f4o_A_G33_A34	AAA	AA08	10	0.55	AA08
019	8f4o_A_A34_A35	AAw	AA06	60	0.31	AA06
020	8f4o_A_A35_G36	AAA	AA08	77	0.19	AA08
021	8f4o_A_G36_G37	AAA	AA00	72	0.18	AA00
022	8f4o_A_G37_C38	AAA	AA00	36	0.20	AA00
023	8f4o_A_C38_U39	AAA	AA00	80	0.14	AA00
024	8f4o_A_U39_G40	AAA	AA08	69	0.41	AA08
025	8f4o_A_G40_A41	OPN	OP04	72	0.15	OP04
026	8f4o_A_A41_G42	AAA	AA08	71	0.33	AA08
027	8f4o_A_G42_A43	ICL	IC01	82	0.24	IC01
028	8f4o_A_A43_A44	NAN	NANT	0	0.84	OP22
029	8f4o_A_A44_A45	ZZZ	ZZ02	13	0.57	ZZ02
030	8f4o_A_A45_U46	NAN	NANT	0	0.73	AA05
031	8f4o_A_U46_A47	NAN	NANT	0	0.44	OP22
032	8f4o_A_A47_C48	AAA	AA00	67	0.22	AA00
033	8f4o_A_C48_C49	AAA	AA08	91	0.15	AA08
034	8f4o_A_C49_C50	AAA	AA08	92	0.16	AA08
035	8f4o_A_C50_G51	AAA	AA00	77	0.21	AA00
036	8f4o_A_A56_C57	NAN	NANT	0	0.71	AA04
037	8f4o_A_C57_C58	AAA	AA08	60	0.27	AA08
038	8f4o_A_C58_U59	AAA	AA08	77	0.21	AA08
039	8f4o_A_U59_G60	AAA	AA00	78	0.23	AA00
040	8f4o_A_G60_A61	AAA	AA00	92	0.15	AA00
041	8f4o_A_A61_U62	AAA	AA00	75	0.19	AA00
042	8f4o_A_U62_C63	AAA	AA00	74	0.20	AA00
043	8f4o_A_C63_U64	NAN	NANT	0	1.81	OP31
044	8f4o_A_U64_G65	AAA	AA08	89	0.12	AA08
045	8f4o_A_G65_G66	AAA	AA00	47	0.23	AA00
046	8f4o_A_G66_A67	AAA	AA08	76	0.32	AA08
047	8f4o_A_A67_U68	NAN	NANT	0	0.77	AA03
048	8f4o_A_U68_A69	NAN	NANT	0	0.66	OP21
049	8f4o_A_A69_A70	NAN	NANT	0	0.73	OP11
050	8f4o_A_A70_U71	AAA	AA04	76	0.19	AA04
051	8f4o_A_U71_G72	NAN	NANT	0	2.01	AA13
052	8f4o_A_G72_C73	NAN	NANT	0	0.54	OP11
053	8f4o_A_C73_C74	AAA	AA08	71	0.20	AA08
054	8f4o_A_C74_A75	AAA	AA00	73	0.18	AA00
055	8f4o_A_A75_G76	AAA	AA08	67	0.37	AA08
056	8f4o_A_G76_C77	NAN	NANT	0	1.24	AA11
057	8f4o_A_C77_G78	NAN	NANT	0	1.74	IC01
058	8f4o_A_G78_U79	NAN	NANT	0	0.99	OP15
059	8f4o_A_U79_A80	NAN	NANT	0	1.11	OP09
060	8f4o_A_A80_G81	B-A	BA16	21	0.23	BA16
061	8f4o_A_G81_G82	AAA	AA00	64	0.15	AA00
062	8f4o_A_G82_G83	AAA	AA00	35	0.33	AA00
063	8f4o_A_G83_A84	NAN	NANT	0	0.35	AA07
064	8f4o_A_A84_A85	NAN	NANT	0	0.59	IC07
065	8f4o_A_A85_G86	NAN	NANT	0	0.48	BA08
066	8f4o_A_G86_U87	AAA	AA00	55	0.22	AA00
067	8f4o_A_U87_C88	AAA	AA04	76	0.33	AA04
068	8f4o_A_C88_G89	AAA	AA00	71	0.17	AA00
069	8f4o_A_G89_C90	NAN	NANT	0	0.53	AA08
070	8f4o_B_G9_C10	NAN	NANT	0	0.73	OP11
071	8f4o_B_C10_G11	AAA	AA00	54	0.25	AA00
072	8f4o_B_G11_A12	AAA	AA08	73	0.19	AA08
073	8f4o_B_A12_C13	AAA	AA04	51	0.42	AA04
074	8f4o_B_C13_U14	AAA	AA00	28	0.28	AA00
075	8f4o_B_U14_C15	AAw	AA10	66	0.17	AA10
076	8f4o_B_C15_G16	AAw	AA01	27	0.27	AA01
077	8f4o_B_G16_G17	AAA	AA00	49	0.21	AA00
078	8f4o_B_G17_G18	AAA	AA00	70	0.28	AA00
079	8f4o_B_G18_G19	AAA	AA08	74	0.35	AA08
080	8f4o_B_G19_U20	AAA	AA00	76	0.16	AA00
081	8f4o_B_U20_G21	NAN	NANT	0	1.45	OP27
082	8f4o_B_A34_A35	NAN	NANT	0	0.84	AA11
083	8f4o_B_A35_G36	AAA	AA00	37	0.28	AA00
084	8f4o_B_G36_G37	NAN	NANT	0	0.55	AA08
085	8f4o_B_G37_C38	AAA	AA08	40	0.33	AA08
086	8f4o_B_C38_U39	AAA	AA03	54	0.19	AA03
087	8f4o_B_U39_G40	AAA	AA08	75	0.23	AA08
088	8f4o_B_G40_A41	NAN	NANT	0	0.40	OP03
089	8f4o_B_A41_G42	AAA	AA08	80	0.31	AA08
090	8f4o_B_G42_A43	NAN	NANT	0	0.51	IC03
091	8f4o_B_A43_A44	NAN	NANT	0	1.03	ZZ02
092	8f4o_B_A44_A45	NAN	NANT	0	0.84	OP22
093	8f4o_B_A45_U46	NAN	NANT	0	1.23	BB03
094	8f4o_B_U46_A47	NAN	NANT	0	0.86	OP15
095	8f4o_B_A47_C48	AAA	AA08	80	0.18	AA08
096	8f4o_B_C48_C49	AAA	AA00	86	0.09	AA00
097	8f4o_B_C49_C50	AAA	AA08	39	0.22	AA08
098	8f4o_B_C50_G51	AAA	AA03	62	0.28	AA03
099	8f4o_B_G51_U.A52	NAN	NANT	0	1.36	OP30
100	8f4o_B_G51_U.B52	NAN	NANT	0	1.83	OP21
101	8f4o_B_U.A52_A53	NAN	NANT	0	2.74	OP04
102	8f4o_B_U.B52_A53	NAN	NANT	0	2.05	BB14
103	8f4o_B_A53_U54	NAN	NANT	0	1.66	OP18
104	8f4o_B_U54_C55	NAN	NANT	0	1.82	IC04
105	8f4o_B_C55_A56	NAN	NANT	0	1.70	OP17
106	8f4o_B_A56_C57	AAA	AA08	26	0.69	AA08
107	8f4o_B_C57_C58	AAA	AA03	76	0.21	AA03
108	8f4o_B_C58_U59	AAA	AA00	83	0.16	AA00
109	8f4o_B_U59_G60	AAA	AA08	80	0.27	AA08
110	8f4o_B_G60_A61	AAA	AA08	85	0.20	AA08
111	8f4o_B_A61_U62	AAA	AA00	41	0.21	AA00
112	8f4o_B_U62_C63	AAA	AA09	68	0.25	AA09
113	8f4o_B_C63_U64	NAN	NANT	0	1.88	OP25
114	8f4o_B_U64_G65	AAA	AA00	46	0.23	AA00
115	8f4o_B_G65_G66	NAN	NANT	0	0.40	AA10
116	8f4o_B_G66_A67	AAA	AA08	25	0.78	AA08
117	8f4o_B_G72_C73	AAA	AA08	35	0.46	AA08
118	8f4o_B_C73_C74	NAN	NANT	0	0.51	AA11
119	8f4o_B_C74_A75	AAA	AA08	66	0.32	AA08
120	8f4o_B_A75_G76	AAw	AA10	42	0.40	AA10
121	8f4o_B_G76_C77	AAw	AA11	48	0.50	AA11
122	8f4o_B_C77_G78	NAN	NANT	0	0.97	IC03
123	8f4o_B_G78_U79	SYN	AAS1	68	0.53	AAS1
124	8f4o_B_U79_A80	NAN	NANT	0	0.69	OP06
125	8f4o_B_A80_G81	B-A	BA16	20	0.32	BA16
126	8f4o_B_G81_G82	AAA	AA04	90	0.20	AA04
127	8f4o_B_G82_G83	AAA	AA08	82	0.35	AA08
128	8f4o_B_G83_A84	NAN	NANT	0	0.31	AA07
129	8f4o_B_A84_A85	NAN	NANT	0	0.55	IC07
130	8f4o_B_A85_G86	NAN	NANT	0	0.39	BA08
131	8f4o_B_G86_U87	AAw	AA10	34	0.37	AA10
132	8f4o_B_U87_C88	AAA	AA08	29	0.33	AA08
133	8f4o_B_C88_G89	AAA	AA08	31	0.38	AA08

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

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Results of the assignment of 133 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Definitions

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