Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Human DNA polymerase eta-DNA-rU-ended primer ternary mismatch complex:reaction with 10 mM Mn2+ for 300s
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 25 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 8e8h_T_DT.A5_DA.A6 | BBB | BB00 | 54 | 0.24 |
| 02 | 8e8h_T_DT.C5_DA.C6 | B12 | BB04 | 14 | 0.40 |
| 03 | 8e8h_T_DA.A6_DT7 | NAN | NANT | 0 | 0.45 |
| 04 | 8e8h_T_DA.C6_DT7 | NAN | NANT | 0 | 0.53 |
| 05 | 8e8h_T_DT7_DG.A8 | NAN | NANT | 0 | 0.58 |
| 06 | 8e8h_T_DT7_DG.B8 | NAN | NANT | 0 | 0.50 |
| 07 | 8e8h_T_DG.A8_DA.A9 | BBB | BB00 | 23 | 0.47 |
| 08 | 8e8h_T_DG.B8_DA.B9 | BBB | BB00 | 23 | 0.33 |
| 09 | 8e8h_T_DA.A9_DC10 | B-A | BA05 | 93 | 0.23 |
| 10 | 8e8h_T_DA.B9_DC10 | B-A | BA05 | 79 | 0.21 |
| 11 | 8e8h_T_DC10_DG11 | BBB | BB00 | 18 | 0.37 |
| 12 | 8e8h_T_DG11_DC12 | BBB | BB01 | 63 | 0.15 |
| 13 | 8e8h_T_DC12_DT13 | NAN | NANT | 0 | 0.23 |
| 14 | 8e8h_P_DA2_DG3 | BBB | BB00 | 13 | 0.37 |
| 15 | 8e8h_P_DG3_DC4 | BBB | BB01 | 79 | 0.16 |
| 16 | 8e8h_P_DC4_DG5 | BBB | BB00 | 66 | 0.17 |
| 17 | 8e8h_P_DG5_DT6 | BBB | BB00 | 86 | 0.20 |
| 18 | 8e8h_P_DT6_DC7 | BBB | BB01 | 75 | 0.18 |
| 19 | 8e8h_P_DC7_DA.A8 | BBB | BB01 | 55 | 0.23 |
| 20 | 8e8h_P_DC7_DA.B8 | BBB | BB01 | 40 | 0.25 |
| 21 | 8e8h_P_DA.A8_U.A9 | B-A | BA08 | 32 | 0.39 |
| 22 | 8e8h_P_DA.A8_U.C9 | B-A | BA08 | 46 | 0.29 |
| 23 | 8e8h_P_DA.B8_U.B9 | A-B | AB03 | 55 | 0.34 |
| 24 | 8e8h_P_DA.B8_U.C9 | B-A | BA05 | 9 | 0.43 |
| 25 | 8e8h_P_U.C9_DG.C10 | NAN | NANT | 0 | 0.39 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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