Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Human DNA polymerase eta-DNA-rU-ended primer ternary mismatch complex:ground state at pH7.0 (K+ MES) with 1 Ca2+ ion
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 22 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 8e8b_T_DT5_DA.A6 | BBB | BB00 | 83 | 0.18 |
| 02 | 8e8b_T_DT5_DA.B6 | B12 | BB04 | 40 | 0.32 |
| 03 | 8e8b_T_DA.A6_DT7 | B-A | BA09 | 65 | 0.33 |
| 04 | 8e8b_T_DA.B6_DT7 | B-A | BA09 | 42 | 0.29 |
| 05 | 8e8b_T_DT7_DG.A8 | NAN | NANT | 0 | 0.58 |
| 06 | 8e8b_T_DT7_DG.B8 | NAN | NANT | 0 | 0.51 |
| 07 | 8e8b_T_DG.A8_DA.A9 | BBB | BB00 | 12 | 0.49 |
| 08 | 8e8b_T_DG.B8_DA.B9 | BBB | BB01 | 28 | 0.29 |
| 09 | 8e8b_T_DA.A9_DC10 | B-A | BA05 | 86 | 0.26 |
| 10 | 8e8b_T_DA.B9_DC10 | BBB | BB01 | 70 | 0.17 |
| 11 | 8e8b_T_DC10_DG11 | BBB | BB00 | 23 | 0.37 |
| 12 | 8e8b_T_DG11_DC12 | BBB | BB00 | 68 | 0.16 |
| 13 | 8e8b_T_DC12_DT13 | BBB | BB00 | 85 | 0.21 |
| 14 | 8e8b_P_DA2_DG3 | BBB | BB00 | 36 | 0.36 |
| 15 | 8e8b_P_DG3_DC4 | BBB | BB00 | 59 | 0.21 |
| 16 | 8e8b_P_DC4_DG5 | BBB | BB00 | 66 | 0.20 |
| 17 | 8e8b_P_DG5_DT6 | BBB | BB00 | 70 | 0.25 |
| 18 | 8e8b_P_DT6_DC7 | BBB | BB01 | 76 | 0.18 |
| 19 | 8e8b_P_DC7_DA.A8 | B-A | BA05 | 66 | 0.23 |
| 20 | 8e8b_P_DC7_DA.B8 | BBB | BB01 | 55 | 0.19 |
| 21 | 8e8b_P_DA.A8_U.A9 | NAN | NANT | 0 | 0.47 |
| 22 | 8e8b_P_DA.B8_U.B9 | NAN | NANT | 0 | 0.42 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
Show
| Color by conformation group (pyramids) | |
|---|---|
| group | |||||||||
| visible |
| Color by NtC (balls) |
|---|
| A | ||||
|---|---|---|---|---|
| A-B | ||||
|---|---|---|---|---|
| B-A | ||||
|---|---|---|---|---|
| B | ||||
|---|---|---|---|---|
| IC | ||||
|---|---|---|---|---|
| OPN | ||||
|---|---|---|---|---|
| Z | ||||
|---|---|---|---|---|
| N | ||||
|---|---|---|---|---|