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Conformers: ABBIImiBZICOPNSYNN
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Human DNA polymerase eta-DNA-rC-ended primer-dGMPNPP ternary mismatch complex with Mn2+

Results of the assignment of 15 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
018e86_T_DT5_DG6BBBBB00880.14 BB00
028e86_T_DG6_DT7miBBB12330.45 BB12
038e86_T_DT7_DG8NANNANT00.45 BB16
048e86_T_DG8_DA9BBBBB00270.41 BB00
058e86_T_DA9_DC10BBBBB01810.21 BB01
068e86_T_DC10_DG11B12BB04450.25 BB04
078e86_T_DG11_DC12BBBBB00870.17 BB00
088e86_T_DC12_DT13BBBBB00910.20 BB00
098e86_P_DA2_DG3BBBBB00430.38 BB00
108e86_P_DG3_DC4BBBBB01400.22 BB01
118e86_P_DC4_DG5BBBBB01570.18 BB01
128e86_P_DG5_DT6BBBBB00710.22 BB00
138e86_P_DT6_DC7BBBBB01860.16 BB01
148e86_P_DC7_DA8BBBBB01740.20 BB01
158e86_P_DA8_C9B-ABA09220.47 BA09

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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