DNATCO v4.1: results

Crystal structure of coxsackievirus B3 cloverleaf RNA replication element

Results of the assignment of 89 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
01	8dp3_R_G1_G2	AAA	AA00	91	0.11	AA00
02	8dp3_R_G2_U3	AAA	AA00	79	0.12	AA00
03	8dp3_R_U3_A4	AAA	AA08	81	0.17	AA08
04	8dp3_R_A4_A5	AAA	AA00	91	0.14	AA00
05	8dp3_R_A5_A6	AAw	AA01	83	0.16	AA01
06	8dp3_R_A6_A7	AAA	AA00	80	0.18	AA00
07	8dp3_R_A7_C8	AAA	AA08	91	0.11	AA08
08	8dp3_R_C8_A9	AAA	AA04	91	0.22	AA04
09	8dp3_R_A9_G10	AAA	AA00	74	0.19	AA00
10	8dp3_R_G10_C11	NAN	NANT	0	0.51	OP30
11	8dp3_R_C11_C12	AAA	AA08	65	0.24	AA08
12	8dp3_R_C12_U13	AAA	AA00	61	0.14	AA00
13	8dp3_R_U13_G14	AAw	AA06	92	0.14	AA06
14	8dp3_R_G14_U15	AAA	AA08	87	0.17	AA08
15	8dp3_R_U15_G16	AAA	AA08	84	0.20	AA08
16	8dp3_R_G16_G17	AAA	AA00	84	0.09	AA00
17	8dp3_R_G17_G18	AAA	AA00	72	0.22	AA00
18	8dp3_R_G18_U19	AAA	AA08	90	0.14	AA08
19	8dp3_R_U19_G20	AAA	AA00	90	0.19	AA00
20	8dp3_R_G20_A21	NAN	NANT	0	0.65	OP05
21	8dp3_R_A21_A22	NAN	NANT	0	0.74	OP20
22	8dp3_R_A22_A23	NAN	NANT	0	0.60	OP13
23	8dp3_R_A23_C24	OPN	OP12	68	0.28	OP12
24	8dp3_R_C24_A25	AAA	AA00	58	0.34	AA00
25	8dp3_R_A25_C26	AAA	AA00	77	0.30	AA00
26	8dp3_R_C26_A27	AAA	AA00	97	0.11	AA00
27	8dp3_R_A27_C28	AAA	AA00	80	0.15	AA00
28	8dp3_R_C28_C29	AAA	AA00	94	0.14	AA00
29	8dp3_R_C29_C30	AAA	AA00	85	0.20	AA00
30	8dp3_R_C30_A31	AAw	AA01	87	0.22	AA01
31	8dp3_R_A31_C32	AAA	AA08	90	0.14	AA08
32	8dp3_R_C32_A33	AAA	AA00	92	0.10	AA00
33	8dp3_R_A33_G34	AAA	AA00	81	0.14	AA00
34	8dp3_R_G34_G35	AAA	AA00	78	0.18	AA00
35	8dp3_R_G35_G36	AAA	AA00	74	0.17	AA00
36	8dp3_R_G36_C37	AAA	AA00	87	0.10	AA00
37	8dp3_R_C37_C38	AAA	AA00	97	0.10	AA00
38	8dp3_R_C38_C39	AAA	AA00	91	0.18	AA00
39	8dp3_R_C39_A40	OPN	OP09	51	0.37	OP09
40	8dp3_R_A40_U41	OPN	OP20	68	0.24	OP20
41	8dp3_R_U41_U42	NAN	NANT	0	0.79	OP30
42	8dp3_R_U42_G43	NAN	NANT	0	0.69	OP11
43	8dp3_R_G43_G44	AAA	AA00	55	0.21	AA00
44	8dp3_R_G44_G45	AAA	AA08	54	0.23	AA08
45	8dp3_R_G45_C46	AAA	AA00	52	0.28	AA00
46	8dp3_R_C46_G47	OPN	OP29	16	0.54	OP29
47	8dp3_R_G47_C48	AAA	AA08	13	0.44	AA08
48	8dp3_R_C48_U49	AAA	AA00	61	0.23	AA00
49	8dp3_R_U49_A50	NAN	NANT	0	1.60	OP28
50	8dp3_R_A50_G51	NAN	NANT	0	1.03	OP11
51	8dp3_R_G51_C52	AAA	AA00	57	0.25	AA00
52	8dp3_R_C52_A53	AAA	AA08	80	0.22	AA08
53	8dp3_R_A53_C54	AAA	AA08	85	0.16	AA08
54	8dp3_R_C54_U55	AAA	AA00	79	0.21	AA00
55	8dp3_R_U55_C56	AAA	AA08	86	0.19	AA08
56	8dp3_R_C56_U57	AAA	AA00	53	0.30	AA00
57	8dp3_R_U57_G58	AAw	AA01	45	0.28	AA01
58	8dp3_R_G58_G59	AAw	AA06	81	0.28	AA06
59	8dp3_R_G59_U60	NAN	NANT	0	0.26	AA03
60	8dp3_R_U60_A61	AAw	AA06	25	0.24	AA06
61	8dp3_R_A61_U62	AAw	AA11	68	0.33	AA11
62	8dp3_R_U62_C63	NAN	NANT	0	0.93	AA08
63	8dp3_R_C63_A64	NAN	NANT	0	0.90	OP04
64	8dp3_R_A64_C65	AAA	AA08	81	0.25	AA08
65	8dp3_R_C65_C66	AAA	AA00	38	0.46	AA00
66	8dp3_R_C66_G67	AAA	AA04	58	0.50	AA04
67	8dp3_R_G67_U68	AAA	AA00	73	0.20	AA00
68	8dp3_R_U68_A69	AAA	AA00	93	0.10	AA00
69	8dp3_R_A69_C70	NAN	NANT	0	0.42	AA01
70	8dp3_R_C70_C71	AAA	AA00	81	0.13	AA00
71	8dp3_R_C71_U72	AAA	AA00	80	0.20	AA00
72	8dp3_R_U72_U73	AAA	AA08	91	0.18	AA08
73	8dp3_R_U73_U74	AAA	AA00	74	0.24	AA00
74	8dp3_R_U74_G75	AAw	AA10	46	0.36	AA10
75	8dp3_R_G75_U76	AAA	AA08	83	0.16	AA08
76	8dp3_R_U76_G77	AAA	AA08	83	0.19	AA08
77	8dp3_R_G77_C78	AAw	AA01	64	0.20	AA01
78	8dp3_R_C78_G79	AAA	AA08	42	0.44	AA08
79	8dp3_R_G79_C80	AAA	AA00	79	0.27	AA00
80	8dp3_R_C80_C81	AAA	AA00	67	0.25	AA00
81	8dp3_R_C81_U82	AAA	AA00	88	0.20	AA00
82	8dp3_R_U82_G83	AAA	AA08	73	0.24	AA08
83	8dp3_R_G83_U84	AAA	AA00	89	0.10	AA00
84	8dp3_R_U84_U85	AAA	AA08	82	0.18	AA08
85	8dp3_R_U85_U86	AAA	AA00	92	0.19	AA00
86	8dp3_R_U86_U87	AAA	AA00	90	0.11	AA00
87	8dp3_R_U87_A88	AAA	AA00	62	0.10	AA00
88	8dp3_R_A88_C89	AAA	AA00	92	0.11	AA00
89	8dp3_R_C89_C90	AAA	AA00	62	0.21	AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

Similarity of step to class averages

Browse conformers

Show

Color by conformation group (pyramids)

Color by NtC (balls)

A-B

B-A

B

IC

OPN

Z

N

Results of the assignment of 89 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Download

Restraints

User-based restraints

Definitions

Download the papers

Browse conformers

Show

group
visible