DNATCO v4.1: results

T7 RNA polymerase elongation complex with unnatural base dPa

Results of the assignment of 109 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
001	8dh3_A_DG3_DA4	NAN	NANT	0	0.60	BB03
002	8dh3_A_DA4_DA5	BBB	BB00	66	0.27	BB00
003	8dh3_A_DA5_DT6	BBB	BB00	78	0.23	BB00
004	8dh3_A_DT6_DC7	miB	BB10	71	0.37	BB10
005	8dh3_A_DC7_DG8	NAN	NANT	0	0.39	BB10
006	8dh3_A_DG8_DA9	miB	BB15	10	0.41	BB15
007	8dh3_A_DA11_DT12	AAA	AA00	82	0.16	AA00
008	8dh3_A_DT12_DC13	AAA	AA00	94	0.16	AA00
009	8dh3_A_DC13_DG14	AAA	AA04	51	0.29	AA04
010	8dh3_A_DG14_DC15	AAA	AA08	76	0.18	AA08
011	8dh3_A_DC15_DC16	AAA	AA00	94	0.16	AA00
012	8dh3_A_DC16_DG17	AAA	AA00	79	0.19	AA00
013	8dh3_A_DG17_DC18	AAA	AA00	82	0.23	AA00
014	8dh3_C_U0_G1	AAA	AA08	57	0.44	AA08
015	8dh3_C_G1_C2	AAA	AA00	76	0.17	AA00
016	8dh3_C_C2_G3	AAA	AA00	85	0.09	AA00
017	8dh3_C_G3_G4	AAA	AA00	77	0.12	AA00
018	8dh3_C_G4_C5	AAA	AA00	92	0.13	AA00
019	8dh3_C_C5_G6	AAA	AA08	85	0.14	AA08
020	8dh3_C_G6_A7	AAA	AA00	65	0.10	AA00
021	8dh3_C_A7_U8	AAA	AA08	74	0.20	AA08
022	8dh3_D_DT2_DC3	BBB	BB00	22	0.45	BB00
023	8dh3_D_DC3_DG4	NAN	NANT	0	0.60	BB08
024	8dh3_D_DG4_DA5	B-A	BA10	9	0.66	BA10
025	8dh3_D_DA5_DT6	NAN	NANT	0	0.89	AA10
026	8dh3_D_DT6_DT7	NAN	NANT	0	0.64	BB02
027	8dh3_D_DT7_DC8	NAN	NANT	0	0.38	BB05
028	8dh3_F_DG2_DG3	NAN	NANT	0	0.48	AA03
029	8dh3_F_DG3_DA4	NAN	NANT	0	0.54	AA11
030	8dh3_F_DA4_DA5	BBw	BB16	73	0.40	BB16
031	8dh3_F_DA5_DT6	BBB	BB00	75	0.20	BB00
032	8dh3_F_DT6_DC7	miB	BB10	84	0.21	BB10
033	8dh3_F_DC7_DG8	miB	BB10	57	0.39	BB10
034	8dh3_F_DG8_DA9	NAN	NANT	0	0.58	BA05
035	8dh3_F_DA11_DT12	AAA	AA00	90	0.17	AA00
036	8dh3_F_DT12_DC13	AAA	AA00	91	0.20	AA00
037	8dh3_F_DC13_DG14	AAA	AA00	88	0.20	AA00
038	8dh3_F_DG14_DC15	AAA	AA00	88	0.19	AA00
039	8dh3_F_DC15_DC16	AAA	AA00	93	0.19	AA00
040	8dh3_F_DC16_DG17	AAA	AA00	72	0.16	AA00
041	8dh3_F_DG17_DC18	AAA	AA00	69	0.30	AA00
042	8dh3_G_G1_C2	AAA	AA08	91	0.15	AA08
043	8dh3_G_C2_G3	AAA	AA08	74	0.22	AA08
044	8dh3_G_G3_G4	AAA	AA08	87	0.15	AA08
045	8dh3_G_G4_C5	AAA	AA00	79	0.15	AA00
046	8dh3_G_C5_G6	AAA	AA08	93	0.16	AA08
047	8dh3_G_G6_A7	AAA	AA03	79	0.18	AA03
048	8dh3_G_A7_U8	AAA	AA08	79	0.21	AA08
049	8dh3_H_DT2_DC3	miB	BB10	28	0.36	BB10
050	8dh3_H_DC3_DG4	NAN	NANT	0	0.73	BA10
051	8dh3_H_DG4_DA5	AAw	AA06	61	0.33	AA06
052	8dh3_H_DA5_DT6	A-B	AB05	27	0.29	AB05
053	8dh3_H_DT6_DT7	NAN	NANT	0	0.49	BB02
054	8dh3_H_DT7_DC8	NAN	NANT	0	0.60	BB08
055	8dh3_H_DC8_DC9	NAN	NANT	0	0.63	BB10
056	8dh3_J_DG3_DA4	A-B	AB05	19	0.65	AB05
057	8dh3_J_DA4_DA5	NAN	NANT	0	0.64	BB02
058	8dh3_J_DA5_DT6	BBB	BB00	34	0.40	BB00
059	8dh3_J_DT6_DC7	BBB	BB00	31	0.33	BB00
060	8dh3_J_DC7_DG8	miB	BB10	40	0.43	BB10
061	8dh3_J_DG8_DA9	B-A	BA09	37	0.41	BA09
062	8dh3_J_DA11_DT12	AAA	AA00	92	0.14	AA00
063	8dh3_J_DT12_DC13	AAA	AA00	93	0.17	AA00
064	8dh3_J_DC13_DG14	NAN	NANT	0	0.35	AA10
065	8dh3_J_DG14_DC15	AAA	AA08	70	0.25	AA08
066	8dh3_J_DC15_DC16	AAA	AA00	93	0.17	AA00
067	8dh3_J_DC16_DG17	NAN	NANT	0	0.34	AA10
068	8dh3_J_DG17_DC18	AAA	AA08	73	0.32	AA08
069	8dh3_K_G1_C2	AAA	AA08	95	0.14	AA08
070	8dh3_K_C2_G3	AAA	AA08	88	0.17	AA08
071	8dh3_K_G3_G4	AAA	AA08	90	0.19	AA08
072	8dh3_K_G4_C5	AAA	AA00	92	0.11	AA00
073	8dh3_K_C5_G6	AAA	AA00	74	0.17	AA00
074	8dh3_K_G6_A7	AAA	AA00	82	0.18	AA00
075	8dh3_K_A7_U8	AAA	AA00	68	0.25	AA00
076	8dh3_L_DT2_DC3	BBB	BB00	66	0.22	BB00
077	8dh3_L_DC3_DG4	NAN	NANT	0	0.47	BB05
078	8dh3_L_DG4_DA5	NAN	NANT	0	0.43	BA16
079	8dh3_L_DA5_DT6	NAN	NANT	0	0.37	BB10
080	8dh3_L_DT6_DT7	miB	BB12	35	0.30	BB12
081	8dh3_L_DT7_DC8	NAN	NANT	0	0.61	BB03
082	8dh3_N_DG2_DG3	NAN	NANT	0	0.72	AA10
083	8dh3_N_DG3_DA4	NAN	NANT	0	1.06	BB17
084	8dh3_N_DA4_DA5	miB	BB10	37	0.53	BB10
085	8dh3_N_DA5_DT6	BBB	BB00	76	0.32	BB00
086	8dh3_N_DT6_DC7	BBB	BB00	84	0.17	BB00
087	8dh3_N_DC7_DG8	miB	BB10	24	0.36	BB10
088	8dh3_N_DG8_DA9	NAN	NANT	0	0.47	BB07
089	8dh3_N_DA11_DT12	AAA	AA00	86	0.19	AA00
090	8dh3_N_DT12_DC13	AAA	AA00	97	0.15	AA00
091	8dh3_N_DC13_DG14	AAA	AA00	84	0.15	AA00
092	8dh3_N_DG14_DC15	AAA	AA00	90	0.15	AA00
093	8dh3_N_DC15_DC16	AAA	AA00	92	0.17	AA00
094	8dh3_N_DC16_DG17	AAA	AA04	90	0.20	AA04
095	8dh3_N_DG17_DC18	NAN	NANT	0	0.54	AA01
096	8dh3_O_G1_C2	AAA	AA03	54	0.30	AA03
097	8dh3_O_C2_G3	NAN	NANT	0	0.46	AA10
098	8dh3_O_G3_G4	AAA	AA08	49	0.27	AA08
099	8dh3_O_G4_C5	AAA	AA00	80	0.10	AA00
100	8dh3_O_C5_G6	AAA	AA08	88	0.16	AA08
101	8dh3_O_G6_A7	AAA	AA00	79	0.10	AA00
102	8dh3_O_A7_U8	AAA	AA08	77	0.24	AA08
103	8dh3_P_DT2_DC3	NAN	NANT	0	0.66	BB10
104	8dh3_P_DC3_DG4	NAN	NANT	0	0.58	BB08
105	8dh3_P_DG4_DA5	BBw	BB11	75	0.35	BB11
106	8dh3_P_DA5_DT6	NAN	NANT	0	0.69	BB10
107	8dh3_P_DT6_DT7	NAN	NANT	0	0.56	BB07
108	8dh3_P_DT7_DC8	NAN	NANT	0	0.66	BB08
109	8dh3_P_DC8_DC9	NAN	NANT	0	0.61	BB10

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

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Results of the assignment of 109 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Restraints

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Definitions

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