DNATCO v4.1: results

T7 RNA polymerase elongation complex with unnatural base dDs-ATP mismatch

Results of the assignment of 90 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
01	8dh2_A_DG2_DG3	NAN	NANT	0	0.69	BB02
02	8dh2_A_DG3_DA4	B12	BB05	17	0.56	BB05
03	8dh2_A_DA4_DA5	BBB	BB00	17	0.50	BB00
04	8dh2_A_DA5_DT6	BBB	BB00	81	0.28	BB00
05	8dh2_A_DT6_DC7	miB	BB10	53	0.28	BB10
06	8dh2_A_DC7_DG8	miB	BB10	12	0.28	BB10
07	8dh2_A_DG8_DA9	B-A	BA01	50	0.25	BA01
08	8dh2_A_DA11_DT12	AAA	AA00	86	0.17	AA00
09	8dh2_A_DT12_DC13	AAA	AA00	88	0.20	AA00
10	8dh2_A_DC13_DG14	AAA	AA04	63	0.25	AA04
11	8dh2_A_DG14_DC15	AAA	AA08	68	0.29	AA08
12	8dh2_A_DC15_DC16	AAA	AA08	79	0.14	AA08
13	8dh2_A_DC16_DG17	AAA	AA00	88	0.21	AA00
14	8dh2_A_DG17_DC18	AAA	AA00	83	0.26	AA00
15	8dh2_C_G1_C2	AAA	AA00	75	0.16	AA00
16	8dh2_C_C2_G3	AAA	AA00	85	0.09	AA00
17	8dh2_C_G3_G4	AAA	AA00	80	0.13	AA00
18	8dh2_C_G4_C5	AAA	AA00	90	0.15	AA00
19	8dh2_C_C5_G6	AAA	AA00	83	0.14	AA00
20	8dh2_C_G6_A7	AAA	AA00	86	0.13	AA00
21	8dh2_D_DT2_DC3	NAN	NANT	0	0.51	AB03
22	8dh2_D_DC3_DG4	NAN	NANT	0	0.35	BB05
23	8dh2_D_DG4_DA5	NAN	NANT	0	0.46	BB05
24	8dh2_D_DA5_DT6	BBB	BB00	41	0.33	BB00
25	8dh2_D_DT6_DT7	miB	BB10	17	0.32	BB10
26	8dh2_D_DT7_DC8	NAN	NANT	0	0.46	BB05
27	8dh2_D_DC8_DC9	NAN	NANT	0	0.91	BB02
28	8dh2_F_DG2_DG3	B12	BB04	63	0.31	BB04
29	8dh2_F_DG3_DA4	BB2	BB07	30	0.34	BB07
30	8dh2_F_DA4_DA5	BBw	BB11	68	0.37	BB11
31	8dh2_F_DA5_DT6	BBB	BB00	23	0.55	BB00
32	8dh2_F_DT6_DC7	NAN	NANT	0	0.37	BB10
33	8dh2_F_DC7_DG8	A-B	AB01	87	0.22	AB01
34	8dh2_F_DG8_DA9	miB	BB10	51	0.28	BB10
35	8dh2_F_DA11_DT12	AAA	AA00	83	0.18	AA00
36	8dh2_F_DT12_DC13	AAA	AA00	97	0.18	AA00
37	8dh2_F_DC13_DG14	AAA	AA00	94	0.17	AA00
38	8dh2_F_DG14_DC15	AAA	AA00	94	0.15	AA00
39	8dh2_F_DC15_DC16	AAA	AA00	66	0.21	AA00
40	8dh2_F_DC16_DG17	AAA	AA00	73	0.17	AA00
41	8dh2_F_DG17_DC18	AAA	AA04	81	0.30	AA04
42	8dh2_G_G1_C2	AAA	AA00	80	0.12	AA00
43	8dh2_G_C2_G3	AAA	AA00	85	0.11	AA00
44	8dh2_G_G3_G4	AAA	AA08	83	0.17	AA08
45	8dh2_G_G4_C5	AAA	AA00	89	0.14	AA00
46	8dh2_G_C5_G6	AAA	AA08	89	0.19	AA08
47	8dh2_G_G6_A7	AAA	AA00	74	0.19	AA00
48	8dh2_H_DT2_DC3	BBw	BB16	34	0.50	BB16
49	8dh2_H_DC3_DG4	miB	BB12	31	0.60	BB12
50	8dh2_H_DG4_DA5	BBB	BB00	28	0.43	BB00
51	8dh2_H_DA5_DT6	BBB	BB00	62	0.27	BB00
52	8dh2_H_DT6_DT7	B12	BB04	11	0.40	BB04
53	8dh2_H_DT7_DC8	BB2	BB07	15	0.27	BB07
54	8dh2_H_DC8_DC9	BBB	BB00	59	0.32	BB00
55	8dh2_J_DC7_DG8	NAN	NANT	0	1.03	BB11
56	8dh2_J_DG8_DA9	NAN	NANT	0	0.64	BB10
57	8dh2_J_DA11_DT12	AAA	AA08	69	0.30	AA08
58	8dh2_J_DT12_DC13	AAA	AA00	76	0.25	AA00
59	8dh2_J_DC13_DG14	AAA	AA00	81	0.21	AA00
60	8dh2_J_DG14_DC15	AAA	AA08	85	0.15	AA08
61	8dh2_J_DC15_DC16	AAA	AA00	94	0.17	AA00
62	8dh2_J_DC16_DG17	AAA	AA04	88	0.17	AA04
63	8dh2_J_DG17_DC18	NAN	NANT	0	0.43	AB05
64	8dh2_K_G1_C2	AAA	AA00	82	0.16	AA00
65	8dh2_K_C2_G3	AAA	AA00	82	0.17	AA00
66	8dh2_K_G3_G4	AAA	AA00	78	0.16	AA00
67	8dh2_K_G4_C5	AAA	AA00	62	0.16	AA00
68	8dh2_K_C5_G6	AAA	AA00	87	0.16	AA00
69	8dh2_K_G6_A7	AAA	AA00	77	0.19	AA00
70	8dh2_M_DA5_DT6	BBB	BB01	80	0.23	BB01
71	8dh2_M_DT6_DC7	BBB	BB00	76	0.21	BB00
72	8dh2_M_DC7_DG8	NAN	NANT	0	0.35	BB10
73	8dh2_M_DG8_DA9	B-A	BA08	49	0.28	BA08
74	8dh2_M_DA11_DT12	AAw	AA01	47	0.36	AA01
75	8dh2_M_DT12_DC13	AAA	AA08	92	0.22	AA08
76	8dh2_M_DC13_DG14	AAA	AA08	86	0.22	AA08
77	8dh2_M_DG14_DC15	AAA	AA00	90	0.18	AA00
78	8dh2_M_DC15_DC16	AAA	AA00	91	0.17	AA00
79	8dh2_M_DC16_DG17	AAA	AA04	88	0.22	AA04
80	8dh2_M_DG17_DC18	AAw	AA01	22	0.32	AA01
81	8dh2_N_G1_C2	AAA	AA00	12	0.44	AA00
82	8dh2_N_C2_G3	AAA	AA00	72	0.19	AA00
83	8dh2_N_G3_G4	AAA	AA00	84	0.11	AA00
84	8dh2_N_G4_C5	AAA	AA00	94	0.10	AA00
85	8dh2_N_C5_G6	AAA	AA08	86	0.12	AA08
86	8dh2_N_G6_A7	AAA	AA00	73	0.21	AA00
87	8dh2_O_DT2_DC3	BB2	BB07	64	0.33	BB07
88	8dh2_O_DC3_DG4	miB	BB10	96	0.28	BB10
89	8dh2_O_DG4_DA5	B-A	BA08	56	0.40	BA08
90	8dh2_O_DA5_DT6	AAw	AA01	60	0.36	AA01

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

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Results of the assignment of 90 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Restraints

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Definitions

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