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Conformers: ABBIImiBZICOPNSYNN
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WhiB3 bound to SigmaAr4-RNAP Beta flap tip chimera and DNA

Results of the assignment of 30 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
018cyf_C_DG1_DA2AAwAA06390.58 AA06
028cyf_C_DA2_DA3NANNANT00.49 AB03
038cyf_C_DA3_DA4BBBBB00350.27 BB00
048cyf_C_DA4_DA5B12BB04390.29 BB04
058cyf_C_DA5_DT6BBBBB01580.18 BB01
068cyf_C_DT6_DC7NANNANT00.44 AB03
078cyf_C_DC7_DG8BBBBB00710.26 BB00
088cyf_C_DG8_DG9B12BB04530.29 BB04
098cyf_C_DG9_DT10BBwBB17630.36 BB17
108cyf_C_DT10_DT11NANNANT00.35 AB02
118cyf_C_DT11_DG12BBBBB00830.17 BB00
128cyf_C_DG12_DT13miBBB10440.36 BB10
138cyf_C_DT13_DG14BBBBB00820.25 BB00
148cyf_C_DG14_DG15B-ABA08800.27 BA08
158cyf_C_DG15_DT16A-BAB01510.27 AB01
168cyf_D_DC1_DA2AAAAA04900.24 AA04
178cyf_D_DA2_DC3AAAAA03260.22 AA03
188cyf_D_DC3_DC4NANNANT00.45 AB02
198cyf_D_DC4_DA5NANNANT00.35 BB10
208cyf_D_DA5_DC6NANNANT00.51 BB02
218cyf_D_DC6_DA7miBBB15370.48 BB15
228cyf_D_DA7_DA8BBBBB00150.39 BB00
238cyf_D_DA8_DC9miBBB15560.26 BB15
248cyf_D_DC9_DC10BBBBB00810.26 BB00
258cyf_D_DC10_DG11BB2BB07870.27 BB07
268cyf_D_DG11_DA12BBBBB00850.25 BB00
278cyf_D_DA12_DT13B-ABA05870.21 BA05
288cyf_D_DT13_DT14BBBBB01500.33 BB01
298cyf_D_DT14_DT15BBBBB01790.10 BB01
308cyf_D_DT15_DT16NANNANT00.36 BB03

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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