Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Crystal structure of the HigB2-HigA2 tetramer in complex with operator DNA
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 58 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 8a0x_E_DG2_DC3 | NAN | NANT | 0 | 0.87 |
| 02 | 8a0x_E_DC3_DC4 | NAN | NANT | 0 | 1.00 |
| 03 | 8a0x_E_DC4_DA5 | NAN | NANT | 0 | 0.64 |
| 04 | 8a0x_E_DA5_DT6 | BBB | BB00 | 53 | 0.30 |
| 05 | 8a0x_E_DT6_DC7 | BBB | BB00 | 43 | 0.19 |
| 06 | 8a0x_E_DC7_DT8 | miB | BB15 | 31 | 0.26 |
| 07 | 8a0x_E_DT8_DG9 | NAN | NANT | 0 | 0.52 |
| 08 | 8a0x_E_DG9_DT10 | AAA | AA00 | 36 | 0.32 |
| 09 | 8a0x_E_DT10_DA11 | AAA | AA00 | 34 | 0.42 |
| 10 | 8a0x_E_DA11_DC12 | A-B | AB01 | 49 | 0.31 |
| 11 | 8a0x_E_DC12_DG13 | BBB | BB00 | 27 | 0.20 |
| 12 | 8a0x_E_DG13_DC14 | BBB | BB00 | 88 | 0.19 |
| 13 | 8a0x_E_DC14_DT15 | B12 | BB04 | 44 | 0.21 |
| 14 | 8a0x_E_DT15_DT16 | BBB | BB00 | 84 | 0.15 |
| 15 | 8a0x_E_DT16_DG17 | B-A | BA05 | 68 | 0.30 |
| 16 | 8a0x_E_DG17_DG18 | A-B | AB01 | 21 | 0.38 |
| 17 | 8a0x_E_DG18_DT19 | BBB | BB00 | 71 | 0.23 |
| 18 | 8a0x_E_DT19_DG20 | B-A | BA08 | 29 | 0.50 |
| 19 | 8a0x_E_DG20_DC21 | miB | BB12 | 54 | 0.33 |
| 20 | 8a0x_E_DC21_DG22 | BBw | BB16 | 68 | 0.30 |
| 21 | 8a0x_E_DG22_DT23 | B-A | BA05 | 59 | 0.29 |
| 22 | 8a0x_E_DT23_DA24 | BBB | BB01 | 29 | 0.23 |
| 23 | 8a0x_E_DA24_DC25 | BBB | BB00 | 66 | 0.33 |
| 24 | 8a0x_E_DC25_DA26 | BBw | BB02 | 35 | 0.43 |
| 25 | 8a0x_E_DA26_DC27 | miB | BB13 | 29 | 0.54 |
| 26 | 8a0x_E_DC27_DT28 | BBB | BB00 | 36 | 0.40 |
| 27 | 8a0x_E_DT28_DT29 | NAN | NANT | 0 | 0.37 |
| 28 | 8a0x_E_DT29_DC30 | BBB | BB00 | 20 | 0.41 |
| 29 | 8a0x_E_DC30_DC31 | NAN | NANT | 0 | 0.51 |
| 30 | 8a0x_F_DG2_DG3 | miB | BB15 | 32 | 0.37 |
| 31 | 8a0x_F_DG3_DA4 | BBB | BB00 | 70 | 0.20 |
| 32 | 8a0x_F_DA4_DA5 | miB | BB12 | 42 | 0.45 |
| 33 | 8a0x_F_DA5_DG6 | BBw | BB16 | 75 | 0.39 |
| 34 | 8a0x_F_DG6_DT7 | B-A | BA10 | 84 | 0.24 |
| 35 | 8a0x_F_DT7_DG8 | AAw | AA10 | 52 | 0.41 |
| 36 | 8a0x_F_DG8_DT9 | AAA | AA00 | 80 | 0.22 |
| 37 | 8a0x_F_DT9_DA10 | NAN | NANT | 0 | 0.40 |
| 38 | 8a0x_F_DA10_DC11 | A-B | AB03 | 68 | 0.42 |
| 39 | 8a0x_F_DC11_DG12 | BBB | BB00 | 90 | 0.15 |
| 40 | 8a0x_F_DG12_DC13 | BBB | BB00 | 62 | 0.22 |
| 41 | 8a0x_F_DC13_DA14 | B12 | BB04 | 57 | 0.32 |
| 42 | 8a0x_F_DA14_DC15 | BBB | BB00 | 91 | 0.17 |
| 43 | 8a0x_F_DC15_DC16 | BBB | BB00 | 51 | 0.21 |
| 44 | 8a0x_F_DC16_DA17 | BB2 | BB07 | 68 | 0.25 |
| 45 | 8a0x_F_DA17_DA18 | BBB | BB00 | 14 | 0.32 |
| 46 | 8a0x_F_DA18_DG19 | BBB | BB00 | 46 | 0.37 |
| 47 | 8a0x_F_DG19_DC20 | miB | BB12 | 84 | 0.28 |
| 48 | 8a0x_F_DC20_DG21 | NAN | NANT | 0 | 0.66 |
| 49 | 8a0x_F_DG21_DT22 | BBB | BB00 | 32 | 0.39 |
| 50 | 8a0x_F_DT22_DA23 | BBB | BB00 | 70 | 0.30 |
| 51 | 8a0x_F_DA23_DC24 | BBw | BB02 | 76 | 0.20 |
| 52 | 8a0x_F_DC24_DA25 | BBw | BB02 | 17 | 0.40 |
| 53 | 8a0x_F_DA25_DG26 | miB | BB13 | 27 | 0.29 |
| 54 | 8a0x_F_DG26_DA27 | NAN | NANT | 0 | 0.58 |
| 55 | 8a0x_F_DA27_DT28 | NAN | NANT | 0 | 0.45 |
| 56 | 8a0x_F_DT28_DG29 | BBB | BB00 | 63 | 0.33 |
| 57 | 8a0x_F_DG29_DG30 | NAN | NANT | 0 | 0.38 |
| 58 | 8a0x_F_DG30_DC31 | NAN | NANT | 0 | 0.80 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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| Color by conformation group (pyramids) | |
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