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Conformers: ABBIImiBZICOPNSYNN
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Influenza A/H7N9 polymerase core dimer with Pol II pSer5 CTD peptide mimic bound in site 2A

Results of the assignment of 22 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
017z4o_UUU_A1_G2AAAAA08320.45 AA08
027z4o_UUU_G2_U3AAAAA08700.28 AA08
037z4o_UUU_U3_A4AAAAA08180.70 AA08
047z4o_UUU_A4_G5SYNAB2S490.28 AB2S
057z4o_UUU_G5_U6NANNANT00.58 IC05
067z4o_UUU_U6_A7NANNANT00.62 ZZ02
077z4o_UUU_A7_A8B-ABA10370.45 BA10
087z4o_UUU_A8_C9AAAAA00810.22 AA00
097z4o_UUU_C9_A10AAwAA01220.40 AA01
107z4o_UUU_A10_A11NANNANT01.17 OP17
117z4o_UUU_A11_G12NANNANT00.46 AB05
127z4o_VVV_A1_G2AAAAA08360.45 AA08
137z4o_VVV_G2_U3AAAAA08690.29 AA08
147z4o_VVV_U3_A4AAAAA08170.71 AA08
157z4o_VVV_A4_G5SYNAB2S490.28 AB2S
167z4o_VVV_G5_U6NANNANT00.57 IC05
177z4o_VVV_U6_A7NANNANT00.61 ZZ02
187z4o_VVV_A7_A8B-ABA10390.44 BA10
197z4o_VVV_A8_C9AAAAA00800.23 AA00
207z4o_VVV_C9_A10AAwAA01200.40 AA01
217z4o_VVV_A10_A11NANNANT01.19 OP17
227z4o_VVV_A11_G12NANNANT00.48 AB05

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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