Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Influenza B polymerase with Pol II pSer5 CTD peptide mimic bound in site 1B and 2B
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 31 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 7z43_RRR_A2_U3 | AAA | AA08 | 48 | 0.33 |
| 02 | 7z43_RRR_U3_A4 | NAN | NANT | 0 | 0.29 |
| 03 | 7z43_RRR_A4_C5 | NAN | NANT | 0 | 2.41 |
| 04 | 7z43_RRR_C5_C6 | NAN | NANT | 0 | 0.56 |
| 05 | 7z43_RRR_C6_U7 | AAA | AA00 | 75 | 0.19 |
| 06 | 7z43_RRR_U7_C8 | AAA | AA08 | 91 | 0.16 |
| 07 | 7z43_RRR_C8_U9 | AAA | AA00 | 70 | 0.25 |
| 08 | 7z43_RRR_U9_G10 | SYN | AB2S | 14 | 0.52 |
| 09 | 7z43_RRR_G10_C11 | NAN | NANT | 0 | 0.65 |
| 10 | 7z43_RRR_C11_U12 | NAN | NANT | 0 | 0.40 |
| 11 | 7z43_RRR_U12_U13 | NAN | NANT | 0 | 1.49 |
| 12 | 7z43_RRR_U13_C14 | NAN | NANT | 0 | 1.22 |
| 13 | 7z43_RRR_C14_U15 | NAN | NANT | 0 | 0.66 |
| 14 | 7z43_RRR_U15_G16 | NAN | NANT | 0 | 0.65 |
| 15 | 7z43_RRR_G16_C17 | AAA | AA00 | 11 | 0.38 |
| 16 | 7z43_VVV_A1_G2 | AAA | AA08 | 25 | 0.64 |
| 17 | 7z43_VVV_G2_U3 | AAA | AA04 | 83 | 0.17 |
| 18 | 7z43_VVV_U3_A4 | AAA | AA08 | 9 | 0.89 |
| 19 | 7z43_VVV_A4_G5 | SYN | AB2S | 24 | 0.20 |
| 20 | 7z43_VVV_G5_U6 | NAN | NANT | 0 | 1.24 |
| 21 | 7z43_VVV_U6_A7 | NAN | NANT | 0 | 0.55 |
| 22 | 7z43_VVV_A7_A8 | B-A | BA13 | 62 | 0.40 |
| 23 | 7z43_VVV_A8_C9 | AAA | AA08 | 77 | 0.18 |
| 24 | 7z43_VVV_C9_A10 | AAA | AA00 | 64 | 0.35 |
| 25 | 7z43_VVV_A10_A11 | NAN | NANT | 0 | 1.59 |
| 26 | 7z43_VVV_A11_G12 | AAA | AA04 | 86 | 0.18 |
| 27 | 7z43_VVV_G12_A13 | AAA | AA04 | 84 | 0.23 |
| 28 | 7z43_VVV_A13_G14 | AAA | AA04 | 64 | 0.31 |
| 29 | 7z43_MaM_A1_A2 | NAN | NANT | 0 | 1.10 |
| 30 | 7z43_MaM_A2_U3 | AAA | AA08 | 73 | 0.27 |
| 31 | 7z43_MaM_U3_C4 | NAN | NANT | 0 | 0.49 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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