Conformers:
ABBIImiBZICOPNSYNN
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Influenza B polymerase with Pol II pSer5 CTD peptide mimic bound in site 2B
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 22 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 7z42_H_A1_G2 | AAA | AA08 | 16 | 0.72 |
| 02 | 7z42_H_G2_U3 | AAA | AA08 | 79 | 0.23 |
| 03 | 7z42_H_U3_A4 | NAN | NANT | 0 | 0.83 |
| 04 | 7z42_H_A4_G5 | SYN | AB2S | 85 | 0.12 |
| 05 | 7z42_H_G5_U6 | NAN | NANT | 0 | 1.22 |
| 06 | 7z42_H_U6_A7 | NAN | NANT | 0 | 0.58 |
| 07 | 7z42_H_A7_A8 | B-A | BA13 | 56 | 0.38 |
| 08 | 7z42_H_A8_C9 | AAA | AA08 | 90 | 0.16 |
| 09 | 7z42_H_C9_A10 | AAA | AA04 | 87 | 0.31 |
| 10 | 7z42_H_A10_A11 | NAN | NANT | 0 | 1.61 |
| 11 | 7z42_H_A11_G12 | A-B | AB05 | 61 | 0.27 |
| 12 | 7z42_V_A1_G2 | AAA | AA08 | 17 | 0.71 |
| 13 | 7z42_V_G2_U3 | AAA | AA08 | 79 | 0.24 |
| 14 | 7z42_V_U3_A4 | NAN | NANT | 0 | 0.83 |
| 15 | 7z42_V_A4_G5 | SYN | AB2S | 85 | 0.12 |
| 16 | 7z42_V_G5_U6 | NAN | NANT | 0 | 1.21 |
| 17 | 7z42_V_U6_A7 | NAN | NANT | 0 | 0.58 |
| 18 | 7z42_V_A7_A8 | B-A | BA13 | 55 | 0.39 |
| 19 | 7z42_V_A8_C9 | AAA | AA08 | 90 | 0.16 |
| 20 | 7z42_V_C9_A10 | AAA | AA04 | 87 | 0.31 |
| 21 | 7z42_V_A10_A11 | NAN | NANT | 0 | 1.63 |
| 22 | 7z42_V_A11_G12 | A-B | AB05 | 56 | 0.29 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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