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Conformers: ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Crystal structure of E. coli heterotetrameric GlyRS in complex with tRNA

Results of the assignment of 125 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0017yse_E_G1_C2AAAAA08540.33 AA08
0027yse_E_C2_G3AAAAA00750.19 AA00
0037yse_E_G3_G4AAAAA08820.29 AA08
0047yse_E_G4_G5AAAAA00860.14 AA00
0057yse_E_G5_A6AAAAA00940.14 AA00
0067yse_E_A6_A7A-BAB05290.21 AB05
0077yse_E_A7_U8OPNOP11460.39 OP11
0087yse_E_U8_A9NANNANT00.90 IC02
0097yse_E_A9_G10NANNANT01.12 OP26
0107yse_E_G10_C11AAAAA08220.39 AA08
0117yse_E_C11_U12AAAAA04700.34 AA04
0127yse_E_U12_C13AAwAA01890.16 AA01
0137yse_E_C13_A14NANNANT00.45 AA01
0147yse_E_A14_G15AAAAA08480.57 AA08
0157yse_E_G18_G19NANNANT00.47 IC05
0167yse_E_G19_U20NANNANT01.12 OP12
0177yse_E_U20_A21NANNANT00.87 OP17
0187yse_E_A21_G22NANNANT00.98 AA01
0197yse_E_G22_A23AAAAA00850.17 AA00
0207yse_E_A23_G24AAAAA00710.16 AA00
0217yse_E_G24_C25AAAAA04830.21 AA04
0227yse_E_C25_A26AAAAA00570.28 AA00
0237yse_E_A26_C27AAAAA00650.34 AA00
0247yse_E_C27_G28AAAAA00700.22 AA00
0257yse_E_G28_A29AAAAA00800.20 AA00
0267yse_E_A29_C30AAAAA00730.25 AA00
0277yse_E_C30_C31NANNANT00.54 AA10
0287yse_E_C31_U32NANNANT00.83 AA10
0297yse_E_U32_U33NANNANT01.21 AB04
0307yse_E_U33_G34NANNANT02.58 OP01
0317yse_E_G34_C35NANNANT00.55 AAS1
0327yse_E_C35_C36NANNANT00.79 AA04
0337yse_E_C36_A37AAAAA00490.41 AA00
0347yse_E_A37_A38AAAAA00540.32 AA00
0357yse_E_A38_G39NANNANT00.68 AA10
0367yse_E_G39_G40NANNANT00.63 AA08
0377yse_E_G40_U41NANNANT00.44 AA10
0387yse_E_U41_C42AAwAA01280.34 AA01
0397yse_E_C42_G43AAwAA01390.37 AA01
0407yse_E_G43_G44AAAAA08540.32 AA08
0417yse_E_G44_G45AAwAA11670.52 AA11
0427yse_E_G45_G46NANNANT00.94 IC03
0437yse_E_G46_U47NANNANT01.92 OP06
0447yse_E_U47_C48NANNANT01.54 OP01
0457yse_E_C48_G49NANNANT01.42 OP05
0467yse_E_G49_C50AAAAA00680.22 AA00
0477yse_E_C50_G51AAAAA08710.19 AA08
0487yse_E_G51_A52AAwAA01730.26 AA01
0497yse_E_A52_G53AAAAA08580.32 AA08
0507yse_E_G53_U54AAAAA08790.18 AA08
0517yse_E_U54_U55AAAAA00460.40 AA00
0527yse_E_U55_C56OPNOP04750.24 OP04
0537yse_E_C56_G57AAAAA00500.36 AA00
0547yse_E_G57_A58ICLIC01800.42 IC01
0557yse_E_A58_G59NANNANT00.49 OP25
0567yse_E_G59_U60NANNANT00.50 AAS1
0577yse_E_U60_C61OPNOP12820.09 OP12
0587yse_E_C61_U62AAAAA00460.30 AA00
0597yse_E_U62_C63AAAAA00860.13 AA00
0607yse_E_C63_G64AAAAA00810.13 AA00
0617yse_E_G64_U65AAAAA00510.28 AA00
0627yse_E_U65_U66AAAAA00720.17 AA00
0637yse_E_U66_U67AAAAA00840.16 AA00
0647yse_E_U67_C68AAAAA00890.18 AA00
0657yse_E_C68_C69AAAAA00840.16 AA00
0667yse_E_C69_C70AAAAA00720.20 AA00
0677yse_E_C70_G71AAAAA00720.22 AA00
0687yse_E_G71_C72AAAAA04640.27 AA04
0697yse_E_C72_U73AAAAA04880.26 AA04
0707yse_E_U73_C74NANNANT00.88 OP30
0717yse_E_C74_C75NANNANT01.67 IC07
0727yse_E_C75_A76AAAAA08270.59 AA08
0737yse_F_G1_C2AAAAA08400.40 AA08
0747yse_F_C2_G3AAAAA00690.25 AA00
0757yse_F_G3_G4AAAAA08800.30 AA08
0767yse_F_G4_G5AAAAA00920.10 AA00
0777yse_F_G5_A6AAAAA00620.25 AA00
0787yse_F_A6_A7A-BAB05160.33 AB05
0797yse_F_A7_U8OPNOP11700.29 OP11
0807yse_F_G10_C11AAAAA08600.25 AA08
0817yse_F_C11_U12AAAAA04620.37 AA04
0827yse_F_U12_C13NANNANT00.41 AA10
0837yse_F_C13_A14NANNANT00.51 AA01
0847yse_F_A14_G15NANNANT00.41 AA05
0857yse_F_G18_G19NANNANT00.43 IC05
0867yse_F_A21_G22NANNANT00.69 AA06
0877yse_F_G22_A23AAAAA08790.28 AA08
0887yse_F_A23_G24NANNANT00.62 AA10
0897yse_F_G24_C25NANNANT00.68 AA01
0907yse_F_C25_A26AAAAA00330.31 AA00
0917yse_F_A26_C27AAAAA04830.27 AA04
0927yse_F_C27_G28AAAAA04410.37 AA04
0937yse_F_C36_A37NANNANT00.88 BB11
0947yse_F_A37_A38NANNANT00.64 BB03
0957yse_F_A38_G39AAwAA10180.65 AA10
0967yse_F_G39_G40NANNANT00.61 IC07
0977yse_F_G43_G44AAAAA08580.25 AA08
0987yse_F_G44_G45AAwAA06180.55 AA06
0997yse_F_G49_C50AAwAA01300.22 AA01
1007yse_F_C50_G51NANNANT00.76 BB2S
1017yse_F_G51_A52NANNANT00.65 AA06
1027yse_F_A52_G53AAwAA11590.39 AA11
1037yse_F_G53_U54AAAAA0050.50 AA00
1047yse_F_U54_U55AAAAA08730.44 AA08
1057yse_F_U55_C56OPNOP04660.21 OP04
1067yse_F_C56_G57AAAAA04540.38 AA04
1077yse_F_G57_A58ICLIC01420.47 IC01
1087yse_F_A58_G59NANNANT01.49 OP18
1097yse_F_G59_U60NANNANT00.72 AAS1
1107yse_F_U60_C61OPNOP12640.23 OP12
1117yse_F_C61_U62AAAAA00570.25 AA00
1127yse_F_U62_C63AAAAA08560.26 AA08
1137yse_F_C63_G64AAAAA00620.17 AA00
1147yse_F_G64_U65AAAAA00720.23 AA00
1157yse_F_U65_U66AAAAA00560.24 AA00
1167yse_F_U66_U67AAAAA00730.22 AA00
1177yse_F_U67_C68AAAAA00750.19 AA00
1187yse_F_C68_C69AAAAA00820.21 AA00
1197yse_F_C69_C70AAAAA08840.14 AA08
1207yse_F_C70_G71AAAAA00790.20 AA00
1217yse_F_G71_C72AAAAA00540.32 AA00
1227yse_F_C72_U73AAAAA00730.30 AA00
1237yse_F_U73_C74NANNANT02.02 IC04
1247yse_F_C74_C75NANNANT01.97 OP31
1257yse_F_C75_A76AAAAA08150.65 AA08

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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