Home or other PDB ID
 
 
 
 
 
 
 
 
 
Selection mode
 
 
 
 
 
 
Conformers: ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Crystal structure of SARS-CoV-2 N-NTD and dsRNA complex

Results of the assignment of 24 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Your browser does not support the HTML5 canvas tag.
Your browser does not support the HTML5 canvas tag.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
017xwz_C_C1_A2AAAAA00700.23 AA00
027xwz_C_A2_C3AAAAA00970.10 AA00
037xwz_C_C3_U4AAAAA00810.19 AA00
047xwz_C_U4_G5AAAAA00860.15 AA00
057xwz_C_G5_A6AAAAA00920.12 AA00
067xwz_C_A6_C7AAAAA00830.16 AA00
077xwz_D_G1_U2AAAAA00860.16 AA00
087xwz_D_U2_C3AAAAA00880.15 AA00
097xwz_D_C3_A4AAAAA00560.22 AA00
107xwz_D_A4_G5AAAAA00850.16 AA00
117xwz_D_G5_U6AAAAA00600.22 AA00
127xwz_D_U6_G7AAAAA00890.16 AA00
137xwz_E_C1_A2NANNANT00.42 AA03
147xwz_E_A2_C3AAAAA00880.20 AA00
157xwz_E_C3_U4AAAAA00950.18 AA00
167xwz_E_U4_G5NANNANT00.26 AA10
177xwz_E_G5_A6AAAAA08390.30 AA08
187xwz_E_A6_C7AAAAA08840.19 AA08
197xwz_F_G1_U2AAAAA08430.33 AA08
207xwz_F_U2_C3AAAAA00670.26 AA00
217xwz_F_C3_A4AAAAA00800.19 AA00
227xwz_F_A4_G5AAAAA00790.15 AA00
237xwz_F_G5_U6AAAAA08680.13 AA08
247xwz_F_U6_G7NANNANT00.75 AA11

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

Return up to random steps in PDB structures ( include large structures )

Show




Color by conformation group (pyramids)

group
visible

Color by NtC (balls)

A

A-B

B-A

B

IC

OPN

Z

N