Conformers:
ABBIImiBZICOPNSYNN
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Crystal Structure of the dimeric Brn2 (Pou3f2) POU domain bound to palindromic MORE DNA
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 19 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 7xrc_A_DA201_DT202 | A-B | AB03 | 57 | 0.36 |
| 02 | 7xrc_A_DT202_DG203 | BB2 | BB07 | 59 | 0.33 |
| 03 | 7xrc_A_DG203_DC204 | B-A | BA05 | 62 | 0.28 |
| 04 | 7xrc_A_DC204_DA205 | B-A | BA05 | 48 | 0.28 |
| 05 | 7xrc_A_DA205_DT206 | A-B | AB01 | 78 | 0.27 |
| 06 | 7xrc_A_DT206_DG207 | BBB | BB00 | 65 | 0.30 |
| 07 | 7xrc_A_DG207_DA208 | B12 | BB04 | 44 | 0.17 |
| 08 | 7xrc_A_DA208_DG209 | BBB | BB00 | 61 | 0.16 |
| 09 | 7xrc_A_DG209_DG210 | BBB | BB00 | 73 | 0.21 |
| 10 | 7xrc_A_DG210_DA211 | NAN | NANT | 0 | 0.30 |
| 11 | 7xrc_B_DC202_DC203 | AAA | AA00 | 14 | 0.40 |
| 12 | 7xrc_B_DC203_DT204 | A-B | AB01 | 56 | 0.22 |
| 13 | 7xrc_B_DT204_DC205 | BBB | BB01 | 47 | 0.34 |
| 14 | 7xrc_B_DC205_DA206 | A-B | AB03 | 83 | 0.24 |
| 15 | 7xrc_B_DA206_DT207 | B-A | BA05 | 89 | 0.16 |
| 16 | 7xrc_B_DT207_DG208 | A-B | AB01 | 58 | 0.35 |
| 17 | 7xrc_B_DG208_DC209 | BB2 | BB07 | 82 | 0.23 |
| 18 | 7xrc_B_DC209_DA210 | B-A | BA05 | 64 | 0.35 |
| 19 | 7xrc_B_DA210_DT211 | BBB | BB01 | 82 | 0.24 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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