Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Crystal structure of MEF2D-MRE complex
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 50 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 7x1n_K_DA2_DA3 | miB | BB10 | 49 | 0.36 |
| 02 | 7x1n_K_DA3_DC4 | NAN | NANT | 0 | 0.32 |
| 03 | 7x1n_K_DC4_DT5 | NAN | NANT | 0 | 0.29 |
| 04 | 7x1n_K_DT5_DA6 | miB | BB10 | 37 | 0.52 |
| 05 | 7x1n_K_DA6_DT7 | NAN | NANT | 0 | 0.35 |
| 06 | 7x1n_K_DT7_DT8 | BBB | BB00 | 75 | 0.31 |
| 07 | 7x1n_K_DT8_DT9 | BBB | BB00 | 65 | 0.29 |
| 08 | 7x1n_K_DT9_DA10 | BBB | BB00 | 37 | 0.33 |
| 09 | 7x1n_K_DA10_DT11 | BBB | BB00 | 45 | 0.25 |
| 10 | 7x1n_K_DT11_DA12 | NAN | NANT | 0 | 0.34 |
| 11 | 7x1n_K_DA12_DA13 | BBw | BB02 | 55 | 0.30 |
| 12 | 7x1n_K_DA13_DG14 | BBB | BB00 | 8 | 0.42 |
| 13 | 7x1n_L_DT2_DC3 | NAN | NANT | 0 | 0.45 |
| 14 | 7x1n_L_DC3_DT4 | NAN | NANT | 0 | 0.78 |
| 15 | 7x1n_L_DT4_DT5 | miB | BB15 | 20 | 0.64 |
| 16 | 7x1n_L_DT5_DA6 | B12 | BB04 | 64 | 0.31 |
| 17 | 7x1n_L_DA6_DT7 | BBB | BB00 | 91 | 0.22 |
| 18 | 7x1n_L_DT7_DA8 | BBB | BB00 | 66 | 0.28 |
| 19 | 7x1n_L_DA8_DA9 | B12 | BB04 | 32 | 0.24 |
| 20 | 7x1n_L_DA9_DA10 | BBB | BB00 | 54 | 0.30 |
| 21 | 7x1n_L_DA10_DT11 | BBB | BB00 | 45 | 0.24 |
| 22 | 7x1n_L_DT11_DA12 | BB2 | BB07 | 40 | 0.35 |
| 23 | 7x1n_L_DA12_DG13 | BBB | BB01 | 11 | 0.36 |
| 24 | 7x1n_L_DG13_DT14 | NAN | NANT | 0 | 0.77 |
| 25 | 7x1n_E_DA2_DA3 | miB | BB10 | 45 | 0.40 |
| 26 | 7x1n_E_DA3_DC4 | NAN | NANT | 0 | 0.37 |
| 27 | 7x1n_E_DC4_DT5 | NAN | NANT | 0 | 0.34 |
| 28 | 7x1n_E_DT5_DA6 | miB | BB10 | 34 | 0.56 |
| 29 | 7x1n_E_DA6_DT7 | NAN | NANT | 0 | 0.37 |
| 30 | 7x1n_E_DT7_DT8 | BBB | BB00 | 68 | 0.27 |
| 31 | 7x1n_E_DT8_DT9 | BBB | BB00 | 52 | 0.35 |
| 32 | 7x1n_E_DT9_DA10 | BBB | BB00 | 21 | 0.37 |
| 33 | 7x1n_E_DA10_DT11 | BBB | BB00 | 36 | 0.28 |
| 34 | 7x1n_E_DT11_DA12 | NAN | NANT | 0 | 0.37 |
| 35 | 7x1n_E_DA12_DA13 | NAN | NANT | 0 | 0.38 |
| 36 | 7x1n_E_DA13_DG14 | NAN | NANT | 0 | 0.69 |
| 37 | 7x1n_E_DG14_DA15 | NAN | NANT | 0 | 0.49 |
| 38 | 7x1n_F_DT2_DC3 | NAN | NANT | 0 | 0.64 |
| 39 | 7x1n_F_DC3_DT4 | NAN | NANT | 0 | 0.77 |
| 40 | 7x1n_F_DT4_DT5 | BBB | BB00 | 9 | 0.67 |
| 41 | 7x1n_F_DT5_DA6 | B12 | BB04 | 60 | 0.30 |
| 42 | 7x1n_F_DA6_DT7 | BBB | BB00 | 83 | 0.23 |
| 43 | 7x1n_F_DT7_DA8 | BBB | BB00 | 76 | 0.23 |
| 44 | 7x1n_F_DA8_DA9 | B12 | BB04 | 36 | 0.22 |
| 45 | 7x1n_F_DA9_DA10 | BBB | BB00 | 41 | 0.32 |
| 46 | 7x1n_F_DA10_DT11 | BBB | BB00 | 48 | 0.26 |
| 47 | 7x1n_F_DT11_DA12 | BB2 | BB07 | 57 | 0.32 |
| 48 | 7x1n_F_DA12_DG13 | B-A | BA05 | 21 | 0.39 |
| 49 | 7x1n_F_DG13_DT14 | BBB | BB00 | 36 | 0.23 |
| 50 | 7x1n_F_DT14_DT15 | BBB | BB00 | 33 | 0.28 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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