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Conformers: ABBIImiBZICOPNSYNN
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ICP1 Csy4

Results of the assignment of 19 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
017wkp_B_G1_U2NANNANT01.20 IC02
027wkp_B_U2_U3NANNANT00.45 OP20
037wkp_B_U3_A4NANNANT00.87 OP27
047wkp_B_A4_G5AAAAA00710.27 AA00
057wkp_B_G5_C6OPNOP01880.32 OP01
067wkp_B_C6_A7AAAAA00720.13 AA00
077wkp_B_A7_G8AAwAA01870.10 AA01
087wkp_B_G8_C9AAAAA08920.13 AA08
097wkp_B_C9_C10AAAAA00790.24 AA00
107wkp_B_C10_G11AAAAA00480.40 AA00
117wkp_B_G11_C12OPNOP04830.24 OP04
127wkp_B_C12_A13AAAAA08570.30 AA08
137wkp_B_A13_U14NANNANT00.96 OP04
147wkp_B_U14_A15NANNANT01.94 OP16
157wkp_B_A15_G16AAAAA08640.45 AA08
167wkp_B_G16_G17AAAAA00790.24 AA00
177wkp_B_G17_C18AAAAA08940.14 AA08
187wkp_B_C18_U19AAAAA00850.21 AA00
197wkp_B_U19_G20A-BAB05850.16 AB05

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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