DNATCO v4.1: results

NMR Solution Structure of a cGMP Fill-in Vacancy G-quadruplex Formed in the Oxidized BLM Gene Promoter

Results of the assignment of 180 detected steps in 10 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
001	7wgw-m10_X_DA2_DA3	NAN	NANT	0	1.12	BB00
002	7wgw-m1_X_DA2_DA3	NAN	NANT	0	0.76	OP12
003	7wgw-m2_X_DA2_DA3	NAN	NANT	0	0.72	OP12
004	7wgw-m3_X_DA2_DA3	NAN	NANT	0	0.69	OP12
005	7wgw-m4_X_DA2_DA3	NAN	NANT	0	1.11	BB00
006	7wgw-m5_X_DA2_DA3	NAN	NANT	0	1.12	BB00
007	7wgw-m6_X_DA2_DA3	NAN	NANT	0	0.70	OP12
008	7wgw-m7_X_DA2_DA3	NAN	NANT	0	1.10	BB00
009	7wgw-m8_X_DA2_DA3	NAN	NANT	0	0.73	OP12
010	7wgw-m9_X_DA2_DA3	NAN	NANT	0	0.69	OP12
011	7wgw-m10_X_DA3_DG4	NAN	NANT	0	0.62	ZZ02
012	7wgw-m1_X_DA3_DG4	NAN	NANT	0	0.65	ZZ02
013	7wgw-m2_X_DA3_DG4	NAN	NANT	0	0.55	ZZ02
014	7wgw-m3_X_DA3_DG4	NAN	NANT	0	0.62	ZZ02
015	7wgw-m4_X_DA3_DG4	NAN	NANT	0	0.63	ZZ02
016	7wgw-m5_X_DA3_DG4	NAN	NANT	0	0.62	ZZ02
017	7wgw-m6_X_DA3_DG4	NAN	NANT	0	0.62	ZZ02
018	7wgw-m7_X_DA3_DG4	NAN	NANT	0	0.63	ZZ02
019	7wgw-m8_X_DA3_DG4	NAN	NANT	0	0.63	ZZ02
020	7wgw-m9_X_DA3_DG4	NAN	NANT	0	0.60	ZZ02
021	7wgw-m10_X_DG4_DG5	BBB	BB00	54	0.31	BB00
022	7wgw-m1_X_DG4_DG5	BBB	BB00	57	0.29	BB00
023	7wgw-m2_X_DG4_DG5	BBB	BB00	43	0.37	BB00
024	7wgw-m3_X_DG4_DG5	BBB	BB00	59	0.29	BB00
025	7wgw-m4_X_DG4_DG5	BBB	BB00	54	0.31	BB00
026	7wgw-m5_X_DG4_DG5	BBB	BB00	58	0.30	BB00
027	7wgw-m6_X_DG4_DG5	BBB	BB00	62	0.29	BB00
028	7wgw-m7_X_DG4_DG5	BBB	BB00	62	0.29	BB00
029	7wgw-m8_X_DG4_DG5	BBB	BB00	54	0.32	BB00
030	7wgw-m9_X_DG4_DG5	BBB	BB00	55	0.32	BB00
031	7wgw-m10_X_DG5_DG6	BBB	BB00	67	0.32	BB00
032	7wgw-m1_X_DG5_DG6	BBB	BB00	65	0.32	BB00
033	7wgw-m2_X_DG5_DG6	BBB	BB00	74	0.27	BB00
034	7wgw-m3_X_DG5_DG6	BBB	BB00	61	0.36	BB00
035	7wgw-m4_X_DG5_DG6	BBB	BB00	69	0.31	BB00
036	7wgw-m5_X_DG5_DG6	BBB	BB00	70	0.32	BB00
037	7wgw-m6_X_DG5_DG6	BBB	BB00	56	0.41	BB00
038	7wgw-m7_X_DG5_DG6	BBB	BB00	65	0.36	BB00
039	7wgw-m8_X_DG5_DG6	BBB	BB00	71	0.27	BB00
040	7wgw-m9_X_DG5_DG6	BBB	BB00	65	0.36	BB00
041	7wgw-m10_X_DG6_DA7	NAN	NANT	0	0.92	OP18
042	7wgw-m1_X_DG6_DA7	OPN	OP18	11	0.87	OP18
043	7wgw-m2_X_DG6_DA7	OPN	OP18	12	0.84	OP18
044	7wgw-m3_X_DG6_DA7	OPN	OP18	16	0.84	OP18
045	7wgw-m4_X_DG6_DA7	NAN	NANT	0	0.87	OP18
046	7wgw-m5_X_DG6_DA7	NAN	NANT	0	0.83	OP18
047	7wgw-m6_X_DG6_DA7	NAN	NANT	0	0.90	OP18
048	7wgw-m7_X_DG6_DA7	NAN	NANT	0	0.83	OP18
049	7wgw-m8_X_DG6_DA7	NAN	NANT	0	0.87	OP18
050	7wgw-m9_X_DG6_DA7	NAN	NANT	0	0.85	OP18
051	7wgw-m10_X_DA7_DG8	NAN	NANT	0	1.57	OP14
052	7wgw-m1_X_DA7_DG8	NAN	NANT	0	0.83	OP21
053	7wgw-m2_X_DA7_DG8	NAN	NANT	0	0.89	OP21
054	7wgw-m3_X_DA7_DG8	NAN	NANT	0	0.83	OP21
055	7wgw-m4_X_DA7_DG8	NAN	NANT	0	0.91	OP21
056	7wgw-m5_X_DA7_DG8	NAN	NANT	0	0.89	OP21
057	7wgw-m6_X_DA7_DG8	NAN	NANT	0	0.90	OP21
058	7wgw-m7_X_DA7_DG8	NAN	NANT	0	0.89	OP21
059	7wgw-m8_X_DA7_DG8	NAN	NANT	0	0.85	OP21
060	7wgw-m9_X_DA7_DG8	NAN	NANT	0	0.94	OP21
061	7wgw-m10_X_DG8_DG9	BBB	BB00	78	0.26	BB00
062	7wgw-m1_X_DG8_DG9	BBB	BB00	76	0.28	BB00
063	7wgw-m2_X_DG8_DG9	BBB	BB00	76	0.26	BB00
064	7wgw-m3_X_DG8_DG9	BBB	BB00	77	0.27	BB00
065	7wgw-m4_X_DG8_DG9	BBB	BB00	80	0.24	BB00
066	7wgw-m5_X_DG8_DG9	BBB	BB00	79	0.24	BB00
067	7wgw-m6_X_DG8_DG9	BBB	BB00	69	0.32	BB00
068	7wgw-m7_X_DG8_DG9	BBB	BB00	80	0.24	BB00
069	7wgw-m8_X_DG8_DG9	BBB	BB00	75	0.28	BB00
070	7wgw-m9_X_DG8_DG9	BBB	BB00	80	0.23	BB00
071	7wgw-m10_X_DG9_DG10	B12	BB04	69	0.26	BB04
072	7wgw-m1_X_DG9_DG10	BBB	BB00	54	0.43	BB00
073	7wgw-m2_X_DG9_DG10	BBB	BB00	51	0.43	BB00
074	7wgw-m3_X_DG9_DG10	B12	BB04	58	0.31	BB04
075	7wgw-m4_X_DG9_DG10	B12	BB04	62	0.29	BB04
076	7wgw-m5_X_DG9_DG10	BBB	BB00	58	0.40	BB00
077	7wgw-m6_X_DG9_DG10	BB2	BB07	56	0.39	BB07
078	7wgw-m7_X_DG9_DG10	B12	BB04	61	0.30	BB04
079	7wgw-m8_X_DG9_DG10	BBB	BB00	66	0.36	BB00
080	7wgw-m9_X_DG9_DG10	B12	BB04	56	0.32	BB04
081	7wgw-m10_X_DG10_DC11	OPN	OP18	12	0.74	OP18
082	7wgw-m1_X_DG10_DC11	OPN	OP18	19	0.73	OP18
083	7wgw-m2_X_DG10_DC11	OPN	OP18	21	0.72	OP18
084	7wgw-m3_X_DG10_DC11	OPN	OP18	13	0.75	OP18
085	7wgw-m4_X_DG10_DC11	OPN	OP18	11	0.76	OP18
086	7wgw-m5_X_DG10_DC11	OPN	OP18	24	0.70	OP18
087	7wgw-m6_X_DG10_DC11	OPN	OP18	24	0.65	OP18
088	7wgw-m7_X_DG10_DC11	OPN	OP18	18	0.72	OP18
089	7wgw-m8_X_DG10_DC11	OPN	OP18	17	0.75	OP18
090	7wgw-m9_X_DG10_DC11	OPN	OP18	25	0.67	OP18
091	7wgw-m10_X_DC11_DG12	NAN	NANT	0	0.90	OP21
092	7wgw-m1_X_DC11_DG12	NAN	NANT	0	0.85	OP21
093	7wgw-m2_X_DC11_DG12	NAN	NANT	0	0.87	OP21
094	7wgw-m3_X_DC11_DG12	NAN	NANT	0	0.88	OP21
095	7wgw-m4_X_DC11_DG12	NAN	NANT	0	0.88	OP21
096	7wgw-m5_X_DC11_DG12	NAN	NANT	0	0.85	OP21
097	7wgw-m6_X_DC11_DG12	NAN	NANT	0	0.85	OP21
098	7wgw-m7_X_DC11_DG12	NAN	NANT	0	0.83	OP21
099	7wgw-m8_X_DC11_DG12	NAN	NANT	0	0.89	OP21
100	7wgw-m9_X_DC11_DG12	NAN	NANT	0	0.90	OP21
101	7wgw-m10_X_DG12_DG13	BBB	BB00	52	0.40	BB00
102	7wgw-m1_X_DG12_DG13	BBB	BB00	54	0.40	BB00
103	7wgw-m2_X_DG12_DG13	BBB	BB00	68	0.31	BB00
104	7wgw-m3_X_DG12_DG13	BBB	BB00	58	0.38	BB00
105	7wgw-m4_X_DG12_DG13	BBB	BB00	53	0.39	BB00
106	7wgw-m5_X_DG12_DG13	BBB	BB00	64	0.33	BB00
107	7wgw-m6_X_DG12_DG13	BBB	BB00	49	0.42	BB00
108	7wgw-m7_X_DG12_DG13	BBB	BB00	63	0.34	BB00
109	7wgw-m8_X_DG12_DG13	BBB	BB00	67	0.32	BB00
110	7wgw-m9_X_DG12_DG13	BBB	BB00	61	0.35	BB00
111	7wgw-m10_X_DG13_DG14	BB2	BB07	44	0.34	BB07
112	7wgw-m1_X_DG13_DG14	BB2	BB07	43	0.35	BB07
113	7wgw-m2_X_DG13_DG14	BB2	BB08	57	0.24	BB08
114	7wgw-m3_X_DG13_DG14	BB2	BB07	53	0.30	BB07
115	7wgw-m4_X_DG13_DG14	BB2	BB07	42	0.37	BB07
116	7wgw-m5_X_DG13_DG14	BB2	BB08	59	0.23	BB08
117	7wgw-m6_X_DG13_DG14	BB2	BB07	48	0.32	BB07
118	7wgw-m7_X_DG13_DG14	BB2	BB07	43	0.35	BB07
119	7wgw-m8_X_DG13_DG14	BB2	BB08	56	0.22	BB08
120	7wgw-m9_X_DG13_DG14	BB2	BB07	47	0.34	BB07
121	7wgw-m10_X_DG14_DA15	NAN	NANT	0	1.53	BB04
122	7wgw-m1_X_DG14_DA15	NAN	NANT	0	1.51	BB04
123	7wgw-m2_X_DG14_DA15	NAN	NANT	0	1.46	BB04
124	7wgw-m3_X_DG14_DA15	NAN	NANT	0	1.53	BB04
125	7wgw-m4_X_DG14_DA15	NAN	NANT	0	1.44	BB08
126	7wgw-m5_X_DG14_DA15	NAN	NANT	0	1.43	BB04
127	7wgw-m6_X_DG14_DA15	NAN	NANT	0	1.53	BB04
128	7wgw-m7_X_DG14_DA15	NAN	NANT	0	1.53	BB04
129	7wgw-m8_X_DG14_DA15	NAN	NANT	0	1.41	BB08
130	7wgw-m9_X_DG14_DA15	NAN	NANT	0	1.53	BB04
131	7wgw-m10_X_DA15_DG16	NAN	NANT	0	0.99	AAS1
132	7wgw-m1_X_DA15_DG16	NAN	NANT	0	0.99	AAS1
133	7wgw-m2_X_DA15_DG16	NAN	NANT	0	1.01	AAS1
134	7wgw-m3_X_DA15_DG16	NAN	NANT	0	0.98	AAS1
135	7wgw-m4_X_DA15_DG16	NAN	NANT	0	0.93	OP12
136	7wgw-m5_X_DA15_DG16	NAN	NANT	0	0.98	AAS1
137	7wgw-m6_X_DA15_DG16	NAN	NANT	0	0.99	AAS1
138	7wgw-m7_X_DA15_DG16	NAN	NANT	0	0.96	AAS1
139	7wgw-m8_X_DA15_DG16	NAN	NANT	0	0.86	OP12
140	7wgw-m9_X_DA15_DG16	NAN	NANT	0	0.99	AAS1
141	7wgw-m10_X_DG16_DG17	BBw	BB16	35	0.46	BB16
142	7wgw-m1_X_DG16_DG17	BBw	BB16	32	0.48	BB16
143	7wgw-m2_X_DG16_DG17	BBw	BB16	29	0.48	BB16
144	7wgw-m3_X_DG16_DG17	BBw	BB16	35	0.47	BB16
145	7wgw-m4_X_DG16_DG17	BBw	BB16	13	0.58	BB16
146	7wgw-m5_X_DG16_DG17	BBw	BB16	37	0.46	BB16
147	7wgw-m6_X_DG16_DG17	BBw	BB16	28	0.49	BB16
148	7wgw-m7_X_DG16_DG17	BBw	BB16	25	0.50	BB16
149	7wgw-m8_X_DG16_DG17	BBw	BB16	49	0.42	BB16
150	7wgw-m9_X_DG16_DG17	BBw	BB16	39	0.46	BB16
151	7wgw-m10_X_DG17_8OG18	BBB	BB00	68	0.43	BB00
152	7wgw-m1_X_DG17_8OG18	BBB	BB00	71	0.43	BB00
153	7wgw-m2_X_DG17_8OG18	BBB	BB00	70	0.42	BB00
154	7wgw-m3_X_DG17_8OG18	BBB	BB00	69	0.43	BB00
155	7wgw-m4_X_DG17_8OG18	BBB	BB00	68	0.46	BB00
156	7wgw-m5_X_DG17_8OG18	BBB	BB00	70	0.44	BB00
157	7wgw-m6_X_DG17_8OG18	BBB	BB00	67	0.45	BB00
158	7wgw-m7_X_DG17_8OG18	NAN	NANT	0	0.41	BB03
159	7wgw-m8_X_DG17_8OG18	BBB	BB00	66	0.43	BB00
160	7wgw-m9_X_DG17_8OG18	BBB	BB00	69	0.45	BB00
161	7wgw-m10_X_8OG18_DA19	BB2	BB07	57	0.33	BB07
162	7wgw-m1_X_8OG18_DA19	BB2	BB07	56	0.19	BB07
163	7wgw-m2_X_8OG18_DA19	BB2	BB07	57	0.22	BB07
164	7wgw-m3_X_8OG18_DA19	BB2	BB07	54	0.25	BB07
165	7wgw-m4_X_8OG18_DA19	BB2	BB07	67	0.22	BB07
166	7wgw-m5_X_8OG18_DA19	BB2	BB07	67	0.22	BB07
167	7wgw-m6_X_8OG18_DA19	BB2	BB07	53	0.22	BB07
168	7wgw-m7_X_8OG18_DA19	A-B	AB03	51	0.26	AB03
169	7wgw-m8_X_8OG18_DA19	BB2	BB07	55	0.27	BB07
170	7wgw-m9_X_8OG18_DA19	BB2	BB07	61	0.25	BB07
171	7wgw-m10_X_DA19_DA20	NAN	NANT	0	1.42	BB08
172	7wgw-m1_X_DA19_DA20	NAN	NANT	0	1.53	BB04
173	7wgw-m2_X_DA19_DA20	NAN	NANT	0	1.39	BB08
174	7wgw-m3_X_DA19_DA20	NAN	NANT	0	1.39	BB08
175	7wgw-m4_X_DA19_DA20	NAN	NANT	0	1.47	BB07
176	7wgw-m5_X_DA19_DA20	NAN	NANT	0	1.43	BB08
177	7wgw-m6_X_DA19_DA20	NAN	NANT	0	1.48	BB07
178	7wgw-m7_X_DA19_DA20	NAN	NANT	0	1.56	BB07
179	7wgw-m8_X_DA19_DA20	NAN	NANT	0	1.50	BB07
180	7wgw-m9_X_DA19_DA20	NAN	NANT	0	1.40	BB08

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

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IC

OPN

Z

N

Results of the assignment of 180 detected steps in 10 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Restraints

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Definitions

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