Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
C-terminal domain of VraR
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 36 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 7ve5_C_DA1_DG2 | A-B | AB01 | 24 | 0.30 |
| 02 | 7ve5_C_DG2_DA3 | B-A | BA08 | 51 | 0.29 |
| 03 | 7ve5_C_DA3_DC4 | AAA | AA00 | 74 | 0.27 |
| 04 | 7ve5_C_DC4_DT5 | A-B | AB01 | 86 | 0.23 |
| 05 | 7ve5_C_DT5_DA6 | BBB | BB00 | 66 | 0.21 |
| 06 | 7ve5_C_DA6_DA7 | BBB | BB01 | 55 | 0.39 |
| 07 | 7ve5_C_DA7_DA8 | BBB | BB01 | 83 | 0.21 |
| 08 | 7ve5_C_DA8_DG9 | BBB | BB01 | 68 | 0.26 |
| 09 | 7ve5_C_DG9_DT10 | BBB | BB00 | 61 | 0.32 |
| 10 | 7ve5_C_DT10_DA11 | BBB | BB00 | 92 | 0.14 |
| 11 | 7ve5_C_DA11_DT12 | miB | BB15 | 52 | 0.36 |
| 12 | 7ve5_C_DT12_DG13 | NAN | NANT | 0 | 0.48 |
| 13 | 7ve5_C_DG13_DA14 | AAA | AA02 | 13 | 0.61 |
| 14 | 7ve5_C_DA14_DA15 | A-B | AB01 | 87 | 0.15 |
| 15 | 7ve5_C_DA15_DC16 | B-A | BA05 | 83 | 0.15 |
| 16 | 7ve5_C_DC16_DA17 | BBB | BB01 | 40 | 0.30 |
| 17 | 7ve5_C_DA17_DT18 | B-A | BA05 | 51 | 0.26 |
| 18 | 7ve5_C_DT18_DC19 | A-B | AB01 | 39 | 0.36 |
| 19 | 7ve5_D_DG1_DA2 | AAA | AA08 | 69 | 0.27 |
| 20 | 7ve5_D_DA2_DT3 | A-B | AB05 | 26 | 0.25 |
| 21 | 7ve5_D_DT3_DG4 | B-A | BA05 | 68 | 0.26 |
| 22 | 7ve5_D_DG4_DT5 | NAN | NANT | 0 | 0.56 |
| 23 | 7ve5_D_DT5_DT6 | B-A | BA05 | 51 | 0.29 |
| 24 | 7ve5_D_DT6_DC7 | NAN | NANT | 0 | 0.32 |
| 25 | 7ve5_D_DC7_DA8 | NAN | NANT | 0 | 0.64 |
| 26 | 7ve5_D_DA8_DT9 | A-B | AB01 | 74 | 0.27 |
| 27 | 7ve5_D_DT9_DA10 | B-A | BA13 | 84 | 0.22 |
| 28 | 7ve5_D_DA10_DC11 | AAA | AA00 | 82 | 0.23 |
| 29 | 7ve5_D_DC11_DT12 | A-B | AB01 | 77 | 0.25 |
| 30 | 7ve5_D_DT12_DT13 | BBB | BB00 | 29 | 0.25 |
| 31 | 7ve5_D_DT13_DT14 | BBB | BB01 | 79 | 0.24 |
| 32 | 7ve5_D_DT14_DA15 | BBB | BB01 | 79 | 0.28 |
| 33 | 7ve5_D_DA15_DG16 | BBB | BB01 | 76 | 0.26 |
| 34 | 7ve5_D_DG16_DT17 | BBB | BB00 | 75 | 0.34 |
| 35 | 7ve5_D_DT17_DC18 | BBB | BB00 | 96 | 0.13 |
| 36 | 7ve5_D_DC18_DT19 | BBB | BB00 | 44 | 0.26 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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