Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Structure of Ternary Complex of cGAS with dsDNA and Bound 5 -pppG(2 ,5 )pG
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 68 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 7uzr_E_DA1_DT2 | A-B | AB01 | 51 | 0.27 |
| 02 | 7uzr_E_DT2_DC3 | BBB | BB00 | 89 | 0.14 |
| 03 | 7uzr_E_DC3_DT4 | BBB | BB00 | 64 | 0.20 |
| 04 | 7uzr_E_DT4_DG5 | BB2 | BB07 | 48 | 0.34 |
| 05 | 7uzr_E_DG5_DT6 | BBB | BB00 | 81 | 0.19 |
| 06 | 7uzr_E_DT6_DA7 | BBB | BB00 | 80 | 0.21 |
| 07 | 7uzr_E_DA7_DC8 | BBB | BB00 | 65 | 0.30 |
| 08 | 7uzr_E_DC8_DA9 | BBB | BB00 | 85 | 0.21 |
| 09 | 7uzr_E_DA9_DT10 | BBB | BB00 | 85 | 0.14 |
| 10 | 7uzr_E_DT10_DG11 | BBB | BB01 | 81 | 0.15 |
| 11 | 7uzr_E_DG11_DT12 | BBB | BB00 | 51 | 0.28 |
| 12 | 7uzr_E_DT12_DA13 | B12 | BB04 | 50 | 0.25 |
| 13 | 7uzr_E_DA13_DC14 | BBB | BB00 | 95 | 0.12 |
| 14 | 7uzr_E_DC14_DA15 | BBB | BB00 | 76 | 0.29 |
| 15 | 7uzr_E_DA15_DG16 | B12 | BB04 | 84 | 0.17 |
| 16 | 7uzr_E_DG16_DA17 | BBB | BB00 | 81 | 0.13 |
| 17 | 7uzr_E_DA17_DT18 | BBB | BB00 | 56 | 0.18 |
| 18 | 7uzr_F_DA1_DT2 | A-B | AB01 | 60 | 0.25 |
| 19 | 7uzr_F_DT2_DC3 | BBB | BB00 | 89 | 0.14 |
| 20 | 7uzr_F_DC3_DT4 | BBB | BB00 | 50 | 0.19 |
| 21 | 7uzr_F_DT4_DG5 | B12 | BB04 | 66 | 0.27 |
| 22 | 7uzr_F_DG5_DT6 | BBB | BB00 | 91 | 0.15 |
| 23 | 7uzr_F_DT6_DA7 | BBB | BB00 | 89 | 0.16 |
| 24 | 7uzr_F_DA7_DC8 | BBB | BB00 | 75 | 0.21 |
| 25 | 7uzr_F_DC8_DA9 | B12 | BB04 | 45 | 0.20 |
| 26 | 7uzr_F_DA9_DT10 | BBB | BB01 | 78 | 0.20 |
| 27 | 7uzr_F_DT10_DG11 | BBB | BB00 | 36 | 0.27 |
| 28 | 7uzr_F_DG11_DT12 | BBB | BB00 | 87 | 0.18 |
| 29 | 7uzr_F_DT12_DA13 | B12 | BB04 | 64 | 0.23 |
| 30 | 7uzr_F_DA13_DC14 | BBB | BB00 | 90 | 0.17 |
| 31 | 7uzr_F_DC14_DA15 | BB2 | BB07 | 12 | 0.44 |
| 32 | 7uzr_F_DA15_DG16 | B12 | BB04 | 37 | 0.32 |
| 33 | 7uzr_F_DG16_DA17 | BBB | BB00 | 70 | 0.26 |
| 34 | 7uzr_F_DA17_DT18 | BBB | BB00 | 60 | 0.18 |
| 35 | 7uzr_I_DA1_DT2 | A-B | AB01 | 61 | 0.30 |
| 36 | 7uzr_I_DT2_DC3 | BBB | BB01 | 91 | 0.11 |
| 37 | 7uzr_I_DC3_DT4 | BBB | BB00 | 44 | 0.27 |
| 38 | 7uzr_I_DT4_DG5 | BBB | BB00 | 81 | 0.18 |
| 39 | 7uzr_I_DG5_DT6 | BBB | BB00 | 79 | 0.17 |
| 40 | 7uzr_I_DT6_DA7 | BBB | BB00 | 79 | 0.17 |
| 41 | 7uzr_I_DA7_DC8 | BBB | BB00 | 67 | 0.24 |
| 42 | 7uzr_I_DC8_DA9 | B12 | BB04 | 70 | 0.24 |
| 43 | 7uzr_I_DA9_DT10 | BBB | BB00 | 72 | 0.20 |
| 44 | 7uzr_I_DT10_DG11 | B-A | BA10 | 49 | 0.34 |
| 45 | 7uzr_I_DG11_DT12 | NAN | NANT | 0 | 0.46 |
| 46 | 7uzr_I_DT12_DA13 | BBB | BB00 | 61 | 0.27 |
| 47 | 7uzr_I_DA13_DC14 | BBB | BB00 | 92 | 0.16 |
| 48 | 7uzr_I_DC14_DA15 | B12 | BB04 | 58 | 0.16 |
| 49 | 7uzr_I_DA15_DG16 | B12 | BB04 | 51 | 0.29 |
| 50 | 7uzr_I_DG16_DA17 | BBB | BB00 | 74 | 0.22 |
| 51 | 7uzr_I_DA17_DT18 | BBB | BB00 | 59 | 0.16 |
| 52 | 7uzr_J_DA1_DT2 | A-B | AB01 | 54 | 0.26 |
| 53 | 7uzr_J_DT2_DC3 | BBB | BB00 | 88 | 0.13 |
| 54 | 7uzr_J_DC3_DT4 | BBB | BB00 | 68 | 0.20 |
| 55 | 7uzr_J_DT4_DG5 | BBB | BB00 | 77 | 0.19 |
| 56 | 7uzr_J_DG5_DT6 | BBB | BB00 | 85 | 0.21 |
| 57 | 7uzr_J_DT6_DA7 | BBB | BB00 | 85 | 0.17 |
| 58 | 7uzr_J_DA7_DC8 | BBB | BB00 | 71 | 0.20 |
| 59 | 7uzr_J_DC8_DA9 | BBB | BB00 | 61 | 0.37 |
| 60 | 7uzr_J_DA9_DT10 | BBB | BB00 | 74 | 0.25 |
| 61 | 7uzr_J_DT10_DG11 | BBB | BB00 | 65 | 0.18 |
| 62 | 7uzr_J_DG11_DT12 | BBB | BB00 | 84 | 0.23 |
| 63 | 7uzr_J_DT12_DA13 | B12 | BB04 | 83 | 0.17 |
| 64 | 7uzr_J_DA13_DC14 | BBB | BB00 | 93 | 0.17 |
| 65 | 7uzr_J_DC14_DA15 | B12 | BB04 | 53 | 0.19 |
| 66 | 7uzr_J_DA15_DG16 | B12 | BB04 | 36 | 0.34 |
| 67 | 7uzr_J_DG16_DA17 | BBB | BB00 | 71 | 0.25 |
| 68 | 7uzr_J_DA17_DT18 | BBB | BB00 | 58 | 0.17 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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| Color by conformation group (pyramids) | |
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| visible |
| Color by NtC (balls) |
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| A | ||||
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| A-B | ||||
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| B-A | ||||
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| B | ||||
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| IC | ||||
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| OPN | ||||
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| Z | ||||
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| N | ||||
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