DNATCO v4.1: results

Isoreticular, interpenetrating co-crystal of protein variant Replication Initiator Protein REPE54 (L53G,Q54G,E55G) and symmetrical expanded duplex (31mer) containing the cognate REPE54 sequence and an additional G-C rich sequence.

Results of the assignment of 60 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
01	7uxy_A_DC2_DC3	NAN	NANT	0	0.48	BB16
02	7uxy_A_DC3_DC4	B-A	BA01	44	0.24	BA01
03	7uxy_A_DC4_DG5	A-B	AB01	59	0.16	AB01
04	7uxy_A_DG5_DG6	BBB	BB01	84	0.21	BB01
05	7uxy_A_DG6_DA7	BBB	BB00	64	0.28	BB00
06	7uxy_A_DA7_DC8	NAN	NANT	0	0.49	BB13
07	7uxy_A_DC8_DC9	AAA	AA00	83	0.24	AA00
08	7uxy_A_DC9_DT10	AAA	AA00	94	0.18	AA00
09	7uxy_A_DT10_DG11	A-B	AB01	68	0.27	AB01
10	7uxy_A_DG11_DT12	BBB	BB00	83	0.18	BB00
11	7uxy_A_DT12_DG13	BBB	BB00	63	0.32	BB00
12	7uxy_A_DG13_DA14	BBw	BB02	46	0.26	BB02
13	7uxy_A_DA14_DC15	B-A	BA05	41	0.34	BA05
14	7uxy_A_DC15_DA16	BBB	BB00	13	0.34	BB00
15	7uxy_A_DA16_DA17	BBB	BB00	68	0.19	BB00
16	7uxy_A_DA17_DA18	BBB	BB00	80	0.27	BB00
17	7uxy_A_DA18_DT19	BBB	BB01	56	0.22	BB01
18	7uxy_A_DT19_DT20	B-A	BA05	41	0.38	BA05
19	7uxy_A_DT20_DG21	A-B	AB01	50	0.27	AB01
20	7uxy_A_DG21_DC22	BBw	BB02	84	0.15	BB02
21	7uxy_A_DC22_DC23	BBB	BB01	37	0.29	BB01
22	7uxy_A_DC23_DC24	BBB	BB00	65	0.22	BB00
23	7uxy_A_DC24_DT25	BBw	BB02	39	0.33	BB02
24	7uxy_A_DT25_DC26	BBB	BB00	26	0.32	BB00
25	7uxy_A_DC26_DA27	BB2	BB07	43	0.26	BB07
26	7uxy_A_DA27_DG28	BBB	BB00	54	0.39	BB00
27	7uxy_A_DG28_DA29	miB	BB15	70	0.29	BB15
28	7uxy_A_DA29_DC30	BBB	BB00	62	0.31	BB00
29	7uxy_A_DC30_DG31	B12	BB04	73	0.32	BB04
30	7uxy_A_DG31_DG32	NAN	NANT	0	0.34	BB10
31	7uxy_B_DG3_DC4	B12	BB04	70	0.29	BB04
32	7uxy_B_DC4_DC5	BBB	BB00	67	0.30	BB00
33	7uxy_B_DC5_DG6	B12	BB04	12	0.28	BB04
34	7uxy_B_DG6_DT7	BBB	BB01	42	0.33	BB01
35	7uxy_B_DT7_DC8	BBB	BB00	54	0.32	BB00
36	7uxy_B_DC8_DT9	BBw	BB02	69	0.19	BB02
37	7uxy_B_DT9_DG10	BBB	BB00	74	0.33	BB00
38	7uxy_B_DG10_DA11	BB2	BB07	79	0.22	BB07
39	7uxy_B_DA11_DG12	B-A	BA10	76	0.22	BA10
40	7uxy_B_DG12_DG13	AAA	AA00	65	0.24	AA00
41	7uxy_B_DG13_DG14	AAw	AA01	74	0.19	AA01
42	7uxy_B_DG14_DC15	AAA	AA00	44	0.30	AA00
43	7uxy_B_DC15_DA16	A-B	AB03	74	0.39	AB03
44	7uxy_B_DA16_DA17	BBB	BB00	88	0.22	BB00
45	7uxy_B_DA17_DT18	BBw	BB02	51	0.21	BB02
46	7uxy_B_DT18_DT19	BBB	BB00	69	0.20	BB00
47	7uxy_B_DT19_DT20	BBB	BB00	80	0.22	BB00
48	7uxy_B_DT20_DG21	BBB	BB00	90	0.21	BB00
49	7uxy_B_DG21_DT22	BBB	BB01	73	0.21	BB01
50	7uxy_B_DT22_DC23	BBB	BB01	57	0.19	BB01
51	7uxy_B_DC23_DA24	B12	BB04	86	0.18	BB04
52	7uxy_B_DA24_DC25	BBB	BB00	78	0.20	BB00
53	7uxy_B_DC25_DA26	BBB	BB00	71	0.34	BB00
54	7uxy_B_DA26_DG27	BBB	BB01	73	0.30	BB01
55	7uxy_B_DG27_DG28	NAN	NANT	0	0.64	AA10
56	7uxy_B_DG28_DT29	AAA	AA00	12	0.31	AA00
57	7uxy_B_DT29_DC30	A-B	AB01	12	0.28	AB01
58	7uxy_B_DC30_DC31	BBB	BB00	74	0.20	BB00
59	7uxy_B_DC31_DG32	BBB	BB00	85	0.24	BB00
60	7uxy_B_DG32_DG33	miB	BB10	71	0.23	BB10

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

Similarity of step to class averages

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A

A-B

B-A

IC

OPN

Z

N

Results of the assignment of 60 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Restraints

User-based restraints

Definitions

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