DNATCO v4.1: results

Isoreticular, interpenetrating co-crystal of Replication Initiator Protein REPE54 and scaffold duplex (21mer) containing the cognate REPE54 sequence and an insert duplex (10mer) with guest TAMRA-labelled thymine and T-A rich sequence.

Results of the assignment of 58 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
01	7uv7_A_DA0_DC1	AAA	AA08	66	0.22	AA08
02	7uv7_A_DC1_DC2	AAA	AA08	89	0.18	AA08
03	7uv7_A_DC2_DT3	AAA	AA00	39	0.29	AA00
04	7uv7_A_DT3_DG4	A-B	AB04	27	0.40	AB04
05	7uv7_A_DG4_DT5	BBB	BB00	46	0.21	BB00
06	7uv7_A_DT5_DG6	miB	BB15	62	0.35	BB15
07	7uv7_A_DG6_DA7	BBw	BB02	54	0.25	BB02
08	7uv7_A_DA7_DC8	BBB	BB00	42	0.24	BB00
09	7uv7_A_DC8_DA9	BBB	BB00	43	0.24	BB00
10	7uv7_A_DA9_DA10	BBB	BB00	56	0.14	BB00
11	7uv7_A_DA10_DA11	BBB	BB00	64	0.21	BB00
12	7uv7_A_DA11_DT12	BBB	BB01	16	0.25	BB01
13	7uv7_A_DT12_DT13	B-A	BA05	51	0.33	BA05
14	7uv7_A_DT13_DG14	A-B	AB03	56	0.34	AB03
15	7uv7_A_DG14_DC15	B-A	BA10	68	0.30	BA10
16	7uv7_A_DC15_DC16	NAN	NANT	0	0.41	AA04
17	7uv7_A_DC16_DC17	BBw	BB16	19	0.72	BB16
18	7uv7_A_DC17_DT18	NAN	NANT	0	0.26	BB15
19	7uv7_A_DT18_DC19	BBB	BB00	66	0.23	BB00
20	7uv7_A_DC19_DA20	B12	BB04	78	0.26	BB04
21	7uv7_B_DT22_DC23	BBB	BB00	66	0.28	BB00
22	7uv7_B_DC23_DT24	BBw	BB02	79	0.18	BB02
23	7uv7_B_DT24_DG25	BBB	BB00	58	0.41	BB00
24	7uv7_B_DG25_DA26	BB2	BB07	45	0.33	BB07
25	7uv7_B_DA26_DG27	B-A	BA10	67	0.23	BA10
26	7uv7_B_DG27_DG28	AAA	AA00	79	0.27	AA00
27	7uv7_B_DG28_DG29	AAw	AA01	79	0.15	AA01
28	7uv7_B_DG29_DC30	AAA	AA00	64	0.32	AA00
29	7uv7_B_DC30_DA31	A-B	AB01	52	0.20	AB01
30	7uv7_B_DA31_DA32	BBB	BB00	36	0.21	BB00
31	7uv7_B_DA32_DT33	BBB	BB01	75	0.20	BB01
32	7uv7_B_DT33_DT34	BBB	BB01	41	0.22	BB01
33	7uv7_B_DT34_DT35	BBB	BB00	82	0.21	BB00
34	7uv7_B_DT35_DG36	BBB	BB00	69	0.21	BB00
35	7uv7_B_DG36_DT37	BBB	BB00	41	0.27	BB00
36	7uv7_B_DT37_DC38	BBB	BB00	55	0.21	BB00
37	7uv7_B_DC38_DA39	B12	BB04	88	0.16	BB04
38	7uv7_B_DA39_DC40	BBB	BB01	90	0.17	BB01
39	7uv7_B_DC40_DA41	NAN	NANT	0	0.38	BA08
40	7uv7_B_DA41_DG42	NAN	NANT	0	0.49	AA04
41	7uv7_E_DG21_DA22	BBw	BB16	46	0.27	BB16
42	7uv7_E_DA22_DC23	B12	BB04	57	0.25	BB04
43	7uv7_E_DC23_DG24	B12	BB04	22	0.40	BB04
44	7uv7_E_DG24_DG25	BB2	BB07	71	0.16	BB07
45	7uv7_E_DG25_DT26	miB	BB15	64	0.30	BB15
46	7uv7_E_DT26_DA27	B-A	BA08	49	0.53	BA08
47	7uv7_E_DA27_DA28	A-B	AB03	83	0.30	AB03
48	7uv7_E_DA28_DT29	NAN	NANT	0	0.41	BB02
49	7uv7_E_DT29_DT30	NAN	NANT	0	1.22	BB15
50	7uv7_F_DG12_DT13	NAN	NANT	0	0.39	AB2S
51	7uv7_F_DT13_DA14	NAN	NANT	0	0.88	BBS1
52	7uv7_F_DA14_DA15	NAN	NANT	0	0.74	BB07
53	7uv7_F_DA15_DT16	BBB	BB01	46	0.40	BB01
54	7uv7_F_DT16_DT17	NAN	NANT	0	0.37	BB13
55	7uv7_F_DT17_DA18	NAN	NANT	0	0.43	BB03
56	7uv7_F_DA18_DC19	NAN	NANT	0	0.45	BB00
57	7uv7_F_DC19_DC20	miB	BB10	83	0.29	BB10
58	7uv7_F_DC20_DG21	B12	BB04	36	0.30	BB04

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

Similarity of step to class averages

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Results of the assignment of 58 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Restraints

User-based restraints

Definitions

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