DNATCO v4.1: results

Isoreticular, interpenetrating co-crystal of Replication Initiator Protein REPE54 and scaffold duplex (21mer) containing the cognate REPE54 sequence and an insert duplex (10mer) with guest TAMRA-labelled thymine and G-C rich sequence.

Results of the assignment of 58 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
01	7uv6_A_DA0_DC1	AAA	AA00	88	0.17	AA00
02	7uv6_A_DC1_DC2	AAA	AA00	88	0.12	AA00
03	7uv6_A_DC2_DT3	AAA	AA00	80	0.21	AA00
04	7uv6_A_DT3_DG4	A-B	AB05	77	0.14	AB05
05	7uv6_A_DG4_DT5	BBB	BB00	83	0.20	BB00
06	7uv6_A_DT5_DG6	BBB	BB00	83	0.26	BB00
07	7uv6_A_DG6_DA7	BBw	BB02	73	0.24	BB02
08	7uv6_A_DA7_DC8	B-A	BA05	63	0.32	BA05
09	7uv6_A_DC8_DA9	BBB	BB00	14	0.31	BB00
10	7uv6_A_DA9_DA10	BBB	BB00	82	0.14	BB00
11	7uv6_A_DA10_DA11	BBB	BB01	72	0.20	BB01
12	7uv6_A_DA11_DT12	BBB	BB01	58	0.20	BB01
13	7uv6_A_DT12_DT13	B-A	BA05	44	0.40	BA05
14	7uv6_A_DT13_DG14	A-B	AB01	53	0.27	AB01
15	7uv6_A_DG14_DC15	BBw	BB02	54	0.17	BB02
16	7uv6_A_DC15_DC16	BBB	BB01	38	0.30	BB01
17	7uv6_A_DC16_DC17	BBB	BB00	65	0.23	BB00
18	7uv6_A_DC17_DT18	BBw	BB02	38	0.30	BB02
19	7uv6_A_DT18_DC19	NAN	NANT	0	0.40	BB15
20	7uv6_A_DC19_DA20	BB2	BB07	73	0.23	BB07
21	7uv6_B_DT22_DC23	BBB	BB00	15	0.34	BB00
22	7uv6_B_DC23_DT24	BBw	BB02	77	0.23	BB02
23	7uv6_B_DT24_DG25	BBB	BB00	64	0.32	BB00
24	7uv6_B_DG25_DA26	BB2	BB07	76	0.28	BB07
25	7uv6_B_DA26_DG27	B-A	BA10	84	0.16	BA10
26	7uv6_B_DG27_DG28	AAA	AA00	87	0.24	AA00
27	7uv6_B_DG28_DG29	AAw	AA01	77	0.15	AA01
28	7uv6_B_DG29_DC30	AAA	AA00	74	0.29	AA00
29	7uv6_B_DC30_DA31	A-B	AB05	56	0.30	AB05
30	7uv6_B_DA31_DA32	BBB	BB00	77	0.19	BB00
31	7uv6_B_DA32_DT33	BBw	BB02	82	0.16	BB02
32	7uv6_B_DT33_DT34	BBB	BB00	60	0.21	BB00
33	7uv6_B_DT34_DT35	BBB	BB00	81	0.22	BB00
34	7uv6_B_DT35_DG36	BBB	BB00	86	0.24	BB00
35	7uv6_B_DG36_DT37	BBB	BB01	71	0.20	BB01
36	7uv6_B_DT37_DC38	BBB	BB00	40	0.24	BB00
37	7uv6_B_DC38_DA39	B12	BB04	84	0.16	BB04
38	7uv6_B_DA39_DC40	B-A	BA05	84	0.19	BA05
39	7uv6_B_DC40_DA41	BBB	BB00	45	0.36	BB00
40	7uv6_B_DA41_DG42	BBB	BB00	62	0.31	BB00
41	7uv6_E_DG21_DA22	BBB	BB00	86	0.19	BB00
42	7uv6_E_DA22_DC23	BBB	BB00	58	0.20	BB00
43	7uv6_E_DC23_DG24	BBB	BB00	22	0.30	BB00
44	7uv6_E_DG24_DG25	BB2	BB08	88	0.36	BB08
45	7uv6_E_DG25_DC26	BBB	BB00	81	0.25	BB00
46	7uv6_E_DC26_DC27	NAN	NANT	0	0.39	BA08
47	7uv6_E_DC27_DC28	B-A	BA08	63	0.27	BA08
48	7uv6_E_DC28_DG29	A-B	AB01	73	0.29	AB01
49	7uv6_E_DG29_DG30	NAN	NANT	0	0.32	BB15
50	7uv6_F_DG12_DT13	A-B	AB01	16	0.36	AB01
51	7uv6_F_DT13_DC14	BBB	BB00	63	0.22	BB00
52	7uv6_F_DC14_DC15	NAN	NANT	0	0.46	BB04
53	7uv6_F_DC15_DG16	BBB	BB00	18	0.44	BB00
54	7uv6_F_DG16_DG17	BBw	BB02	47	0.42	BB02
55	7uv6_F_DG17_DG18	NAN	NANT	0	0.44	BB10
56	7uv6_F_DG18_DC19	NAN	NANT	0	0.34	BA17
57	7uv6_F_DC19_DC20	BBB	BB00	43	0.29	BB00
58	7uv6_F_DC20_DG21	miB	BB10	36	0.34	BB10

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

Similarity of step to class averages

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Results of the assignment of 58 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Restraints

User-based restraints

Definitions

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