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Conformers: ABBIImiBZICOPNSYNN
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Product of 14mer primer with activated G monomer diastereomer 2

Results of the assignment of 20 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
017u8a_A_LCG4_A5AAAAA00510.17 AA00
027u8a_A_A5_C6AAAAA00600.21 AA00
037u8a_A_C6_U7AAAAA00960.15 AA00
047u8a_A_U7_U8AAAAA00790.17 AA00
057u8a_A_U8_A9AAAAA00850.13 AA00
067u8a_A_A9_A10AAAAA00960.10 AA00
077u8a_A_A10_G11AAAAA00880.14 AA00
087u8a_A_G11_U12AAAAA00900.11 AA00
097u8a_A_U12_C13AAAAA00920.14 AA00
107u8a_A_C13_G14AAAAA00860.20 AA00
117u8a_B_LCG4_A5AAAAA00320.19 AA00
127u8a_B_A5_C6AAAAA00830.19 AA00
137u8a_B_C6_U7AAAAA00920.12 AA00
147u8a_B_U7_U8AAAAA00910.16 AA00
157u8a_B_U8_A9AAAAA00820.12 AA00
167u8a_B_A9_A10AAAAA00900.09 AA00
177u8a_B_A10_G11AAwAA10730.24 AA10
187u8a_B_G11_U12AAAAA00890.13 AA00
197u8a_B_U12_C13AAAAA00800.17 AA00
207u8a_B_C13_G14AAAAA00850.19 AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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