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Conformers: ABBIImiBZICOPNSYNN
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Product of 14mer primer with activated G monomer diastereomer 1

Results of the assignment of 20 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
017u89_A_LCG4_A5AAAAA00490.18 AA00
027u89_A_A5_C6AAAAA00760.20 AA00
037u89_A_C6_U7AAAAA00920.14 AA00
047u89_A_U7_U8AAAAA00890.16 AA00
057u89_A_U8_A9AAAAA00940.12 AA00
067u89_A_A9_A10AAAAA00960.12 AA00
077u89_A_A10_G11AAAAA00920.14 AA00
087u89_A_G11_U12AAAAA00950.12 AA00
097u89_A_U12_C13AAAAA00820.13 AA00
107u89_A_C13_G14AAAAA00880.23 AA00
117u89_B_LCG4_A5AAAAA00750.17 AA00
127u89_B_A5_C6AAAAA00830.18 AA00
137u89_B_C6_U7AAAAA00960.13 AA00
147u89_B_U7_U8AAAAA00900.18 AA00
157u89_B_U8_A9AAAAA00850.17 AA00
167u89_B_A9_A10AAAAA00890.11 AA00
177u89_B_A10_G11AAAAA00860.19 AA00
187u89_B_G11_U12AAAAA00860.19 AA00
197u89_B_U12_C13AAAAA00810.16 AA00
207u89_B_C13_G14AAAAA00760.23 AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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