Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Human DNA polymerase eta-DNA-dGMPNPP ternary mismatch complex in 0.4 mM Mg2+ for 600s
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 26 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 7u7v_T_DA2_DT.A3 | NAN | NANT | 0 | 0.84 |
| 02 | 7u7v_T_DA2_DT.B3 | NAN | NANT | 0 | 1.12 |
| 03 | 7u7v_T_DT.A3_DT4 | NAN | NANT | 0 | 0.79 |
| 04 | 7u7v_T_DT.B3_DT4 | BBB | BB00 | 81 | 0.26 |
| 05 | 7u7v_T_DT4_DA.A5 | BBB | BB00 | 90 | 0.15 |
| 06 | 7u7v_T_DT4_DA.B5 | BBB | BB00 | 86 | 0.17 |
| 07 | 7u7v_T_DA.A5_DT.A6 | B-A | BA09 | 41 | 0.37 |
| 08 | 7u7v_T_DA.B5_DT.B6 | B-A | BA09 | 46 | 0.30 |
| 09 | 7u7v_T_DT.A6_DG.A7 | NAN | NANT | 0 | 0.56 |
| 10 | 7u7v_T_DT.B6_DG.B7 | NAN | NANT | 0 | 0.56 |
| 11 | 7u7v_T_DG.A7_DA8 | BBB | BB01 | 42 | 0.29 |
| 12 | 7u7v_T_DG.B7_DA8 | BBB | BB01 | 41 | 0.29 |
| 13 | 7u7v_T_DA8_DC9 | BBB | BB00 | 76 | 0.21 |
| 14 | 7u7v_T_DC9_DG10 | B12 | BB04 | 31 | 0.22 |
| 15 | 7u7v_T_DG10_DC11 | BBB | BB00 | 81 | 0.20 |
| 16 | 7u7v_T_DC11_DT12 | BBB | BB00 | 90 | 0.22 |
| 17 | 7u7v_P_DA1_DG2 | BBB | BB00 | 20 | 0.36 |
| 18 | 7u7v_P_DG2_DC3 | BBB | BB01 | 71 | 0.17 |
| 19 | 7u7v_P_DC3_DG4 | BBB | BB01 | 45 | 0.18 |
| 20 | 7u7v_P_DG4_DT5 | BBB | BB00 | 84 | 0.21 |
| 21 | 7u7v_P_DT5_DC.A6 | BBB | BB01 | 67 | 0.21 |
| 22 | 7u7v_P_DT5_DC.B6 | BBB | BB01 | 71 | 0.21 |
| 23 | 7u7v_P_DC.A6_DA.A7 | BBB | BB01 | 30 | 0.23 |
| 24 | 7u7v_P_DC.B6_DA.B7 | BBB | BB01 | 49 | 0.22 |
| 25 | 7u7v_P_DA.A7_DT.A8 | NAN | NANT | 0 | 0.38 |
| 26 | 7u7v_P_DA.B7_DT.B8 | A-B | AB03 | 56 | 0.47 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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