Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Human DNA polymerase eta-DNA ternary mismatch complex:reaction with 10.0 mM Mn2+ for 600s
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 38 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 7u7k_T_DA2_DT3 | NAN | NANT | 0 | 1.17 |
| 02 | 7u7k_T_DT3_DT.A4 | BBB | BB00 | 57 | 0.32 |
| 03 | 7u7k_T_DT3_DT.B4 | BBB | BB00 | 50 | 0.29 |
| 04 | 7u7k_T_DT3_DT.C4 | BBB | BB00 | 47 | 0.35 |
| 05 | 7u7k_T_DT.A4_DA.A5 | BBB | BB00 | 83 | 0.16 |
| 06 | 7u7k_T_DT.B4_DA.B5 | BBB | BB00 | 94 | 0.16 |
| 07 | 7u7k_T_DT.C4_DA.C5 | BBB | BB00 | 79 | 0.18 |
| 08 | 7u7k_T_DA.A5_DT.A6 | NAN | NANT | 0 | 0.33 |
| 09 | 7u7k_T_DA.B5_DT.A6 | NAN | NANT | 0 | 0.34 |
| 10 | 7u7k_T_DA.B5_DT.C6 | miB | BB12 | 23 | 0.38 |
| 11 | 7u7k_T_DA.C5_DT.C6 | miB | BB12 | 53 | 0.36 |
| 12 | 7u7k_T_DT.A6_DG.A7 | NAN | NANT | 0 | 0.55 |
| 13 | 7u7k_T_DT.C6_DG.C7 | BBw | BB16 | 18 | 0.47 |
| 14 | 7u7k_T_DG.A7_DA8 | A-B | AB03 | 70 | 0.42 |
| 15 | 7u7k_T_DG.C7_DA8 | BBB | BB00 | 18 | 0.38 |
| 16 | 7u7k_T_DA8_DC9 | BBB | BB00 | 78 | 0.18 |
| 17 | 7u7k_T_DC9_DG10 | B12 | BB04 | 11 | 0.21 |
| 18 | 7u7k_T_DG10_DC11 | BBB | BB00 | 88 | 0.16 |
| 19 | 7u7k_T_DC11_DT12 | BBB | BB00 | 88 | 0.23 |
| 20 | 7u7k_P_DA.A1_DG.A2 | BBB | BB00 | 32 | 0.36 |
| 21 | 7u7k_P_DA.B1_DG.B2 | BBB | BB00 | 36 | 0.36 |
| 22 | 7u7k_P_DG.A2_DC3 | BBB | BB01 | 76 | 0.16 |
| 23 | 7u7k_P_DG.B2_DC3 | BBB | BB01 | 76 | 0.16 |
| 24 | 7u7k_P_DC3_DG4 | BBB | BB00 | 49 | 0.21 |
| 25 | 7u7k_P_DG4_DT5 | BBB | BB00 | 85 | 0.21 |
| 26 | 7u7k_P_DT5_DC.A6 | BBB | BB01 | 88 | 0.13 |
| 27 | 7u7k_P_DT5_DC.C6 | BBB | BB01 | 83 | 0.20 |
| 28 | 7u7k_P_DC.A6_DA.A7 | B-A | BA05 | 68 | 0.21 |
| 29 | 7u7k_P_DC.C6_DA.C7 | B-A | BA05 | 73 | 0.24 |
| 30 | 7u7k_P_DA.A7_DT.A8 | BBB | BB01 | 27 | 0.38 |
| 31 | 7u7k_P_DA.A7_DT.B8 | AAA | AA02 | 23 | 0.48 |
| 32 | 7u7k_P_DA.A7_DT.D8 | NAN | NANT | 0 | 0.56 |
| 33 | 7u7k_P_DA.C7_DT.B8 | NAN | NANT | 0 | 0.44 |
| 34 | 7u7k_P_DA.C7_DT.C8 | NAN | NANT | 0 | 0.30 |
| 35 | 7u7k_P_DA.C7_DT.D8 | NAN | NANT | 0 | 0.55 |
| 36 | 7u7k_P_DT.A8_DG.B9 | NAN | NANT | 0 | 0.70 |
| 37 | 7u7k_P_DT.B8_DG.B9 | AAA | AA03 | 13 | 0.37 |
| 38 | 7u7k_P_DT.C8_DG.C9 | OPN | OP15 | 8 | 0.80 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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| Color by conformation group (pyramids) | |
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| B | ||||
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