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Conformers: ABBIImiBZICOPNSYNN
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Human DNA polymerase eta-DNA ternary mismatch complex:reaction with 10.0 mM Mn2+ for 30s

Results of the assignment of 25 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
017u7d_T_DA2_DT.A3NANNANT01.10 OP18
027u7d_T_DA2_DT.B3NANNANT02.27 OP19
037u7d_T_DT.A3_DT4BBwBB16400.59 BB16
047u7d_T_DT.B3_DT4BBBBB00340.56 BB00
057u7d_T_DT4_DA.A5BBBBB00970.13 BB00
067u7d_T_DT4_DA.B5BBBBB00970.13 BB00
077u7d_T_DA.A5_DT.A6B-ABA09600.30 BA09
087u7d_T_DA.B5_DT.B6B-ABA09600.30 BA09
097u7d_T_DT.A6_DG7NANNANT00.56 AB04
107u7d_T_DT.B6_DG7NANNANT00.56 AB04
117u7d_T_DG7_DA8BBBBB01340.35 BB01
127u7d_T_DA8_DC9BBBBB00700.17 BB00
137u7d_T_DC9_DG10B12BB04460.24 BB04
147u7d_T_DG10_DC11BBBBB00900.15 BB00
157u7d_T_DC11_DT12BBBBB00880.25 BB00
167u7d_P_DA1_DG2BBBBB00350.36 BB00
177u7d_P_DG2_DC3BBBBB01880.15 BB01
187u7d_P_DC3_DG4BBBBB00650.19 BB00
197u7d_P_DG4_DT5BBBBB00810.19 BB00
207u7d_P_DT5_DC.A6BBBBB01700.19 BB01
217u7d_P_DT5_DC.B6BBBBB01780.19 BB01
227u7d_P_DC.A6_DA.A7B-ABA05460.27 BA05
237u7d_P_DC.B6_DA.B7B-ABA05600.22 BA05
247u7d_P_DA.A7_DT.A8A-BAB01660.33 AB01
257u7d_P_DA.B7_DT.B8NANNANT00.42 BB10

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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