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Conformers: ABBIImiBZICOPNSYNN
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Human DNA polymerase eta-DNA ternary mismatch complex:reaction with 1.0 mM Mg2+ for 200s

Results of the assignment of 33 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
017u7a_T_DA.A2_DT.A3NANNANT02.13 OP27
027u7a_T_DA.B2_DT.B3NANNANT01.22 OP18
037u7a_T_DT.A3_DT.A4A-BAB05670.32 AB05
047u7a_T_DT.B3_DT.B4A-BAB04190.33 AB04
057u7a_T_DT.A4_DA.A5BBBBB00830.18 BB00
067u7a_T_DT.A4_DA.C5BBBBB00890.17 BB00
077u7a_T_DT.B4_DA.B5BBBBB00460.23 BB00
087u7a_T_DT.B4_DA.C5BBBBB00840.13 BB00
097u7a_T_DA.A5_DT.A6B-ABA09420.34 BA09
107u7a_T_DA.B5_DT.B6B-ABA09700.31 BA09
117u7a_T_DA.C5_DT.A6B-ABA09500.28 BA09
127u7a_T_DA.C5_DT.B6B-ABA09720.27 BA09
137u7a_T_DT.A6_DG.A7NANNANT00.56 AA00
147u7a_T_DT.B6_DG.B7NANNANT00.57 AA00
157u7a_T_DG.A7_DA8A-BAB01340.32 AB01
167u7a_T_DG.B7_DA8A-BAB01360.32 AB01
177u7a_T_DA8_DC9BBBBB00830.17 BB00
187u7a_T_DC9_DG10B12BB04560.22 BB04
197u7a_T_DG10_DC11BBBBB00900.15 BB00
207u7a_T_DC11_DT12BBBBB00840.25 BB00
217u7a_P_DA1_DG2BBBBB00320.40 BB00
227u7a_P_DG2_DC3BBBBB01770.16 BB01
237u7a_P_DC3_DG4BBBBB01770.15 BB01
247u7a_P_DG4_DT5BBBBB00710.24 BB00
257u7a_P_DT5_DC.A6BBBBB01870.15 BB01
267u7a_P_DT5_DC.B6BBBBB01900.14 BB01
277u7a_P_DC.A6_DA.A7B-ABA05720.22 BA05
287u7a_P_DC.B6_DA.B7B-ABA05790.21 BA05
297u7a_P_DA.A7_DT.A8A-BAB03760.31 AB03
307u7a_P_DA.A7_DT.C8NANNANT00.57 AB03
317u7a_P_DA.B7_DT.B8AAAAA00240.41 AA00
327u7a_P_DA.B7_DT.C8NANNANT00.56 AB03
337u7a_P_DT.B8_DG.B9AAAAA00370.35 AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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