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Conformers: ABBIImiBZICOPNSYNN
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Human DNA polymerase eta-DNA ternary mismatch complex:reaction with 1.0 mM Mg2+ for 140s

Results of the assignment of 33 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
017u79_T_DA2_DT.A3NANNANT01.25 OP18
027u79_T_DA2_DT.B3NANNANT01.59 OP21
037u79_T_DT.A3_DT.A4BBBBB01180.47 BB01
047u79_T_DT.B3_DT.B4A-BAB04460.47 AB04
057u79_T_DT.A4_DA.A5BBBBB00840.13 BB00
067u79_T_DT.A4_DA.C5BBBBB00810.20 BB00
077u79_T_DT.B4_DA.B5BBBBB00630.17 BB00
087u79_T_DT.B4_DA.C5BBBBB00700.23 BB00
097u79_T_DA.A5_DT.A6B-ABA09380.32 BA09
107u79_T_DA.B5_DT.B6B-ABA09540.35 BA09
117u79_T_DA.C5_DT.A6B-ABA09390.33 BA09
127u79_T_DA.C5_DT.B6B-ABA09570.35 BA09
137u79_T_DT.A6_DG.A7NANNANT00.54 AB04
147u79_T_DT.B6_DG.B7NANNANT00.58 AA00
157u79_T_DG.A7_DA8BBBBB01260.35 BB01
167u79_T_DG.B7_DA8A-BAB01660.29 AB01
177u79_T_DA8_DC9BBBBB01860.17 BB01
187u79_T_DC9_DG10BBBBB00430.36 BB00
197u79_T_DG10_DC11BBBBB00870.17 BB00
207u79_T_DC11_DT12BBBBB00870.23 BB00
217u79_P_DA1_DG2BBBBB00480.36 BB00
227u79_P_DG2_DC3BBBBB00330.22 BB00
237u79_P_DC3_DG4BBBBB01760.17 BB01
247u79_P_DG4_DT5BBBBB00430.23 BB00
257u79_P_DT5_DC.A6B-ABA05580.13 BA05
267u79_P_DT5_DC.B6BBBBB01170.28 BB01
277u79_P_DC.A6_DA.A7B-ABA05650.23 BA05
287u79_P_DC.B6_DA.B7B-ABA05220.28 BA05
297u79_P_DA.A7_DT.A8A-BAB03190.32 AB03
307u79_P_DA.A7_DT.C8BBwBB16200.60 BB16
317u79_P_DA.B7_DT.B8AAAAA00250.39 AA00
327u79_P_DA.B7_DT.C8NANNANT00.61 BB16
337u79_P_DT.B8_DG.B9AAAAA00300.39 AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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