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Conformers: ABBIImiBZICOPNSYNN
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Human DNA polymerase eta-DNA ternary mismatch complex:ground state at pH7.0 (K+ MES) with 1 Ca2+ ion

Results of the assignment of 28 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
017u72_T_DA2_DT.A3NANNANT01.11 OP18
027u72_T_DA2_DT.B3NANNANT00.80 OP18
037u72_T_DT.A3_DT4BBBBB00110.44 BB00
047u72_T_DT.B3_DT4BBBBB00610.36 BB00
057u72_T_DT4_DA.A5miBBB15400.33 BB15
067u72_T_DT4_DA.B5B12BB04240.23 BB04
077u72_T_DA.A5_DT.A6B-ABA09140.36 BA09
087u72_T_DA.B5_DT.B6B-ABA09280.30 BA09
097u72_T_DT.A6_DG.A7NANNANT00.56 AB04
107u72_T_DT.B6_DG.B7NANNANT00.58 AA00
117u72_T_DG.A7_DA8BBBBB01330.34 BB01
127u72_T_DG.B7_DA8BBBBB01350.34 BB01
137u72_T_DA8_DC9BBBBB00740.18 BB00
147u72_T_DC9_DG10B12BB04500.22 BB04
157u72_T_DG10_DC11BBBBB00880.16 BB00
167u72_T_DC11_DT12BBBBB00850.24 BB00
177u72_P_DA.A1_DG.A2BBwBB16470.47 BB16
187u72_P_DA.B1_DG.B2A-BAB01820.17 AB01
197u72_P_DG.A2_DC3BBBBB01760.17 BB01
207u72_P_DG.B2_DC3BBBBB01770.12 BB01
217u72_P_DC3_DG4BBBBB01620.18 BB01
227u72_P_DG4_DT5BBBBB00750.23 BB00
237u72_P_DT5_DC.A6BBBBB01780.18 BB01
247u72_P_DT5_DC.B6B-ABA05860.13 BA05
257u72_P_DC.A6_DA.A7B-ABA05360.27 BA05
267u72_P_DC.B6_DA.B7BBBBB01360.22 BB01
277u72_P_DA.A7_DT.A8A-BAB01220.39 AB01
287u72_P_DA.B7_DT.B8A-BAB03530.51 AB03

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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